Version 5.4
Mus musculus Gene: Pdxdc1
Summary
InnateDB Gene IDBG-134210.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pdxdc1
Gene Name pyridoxal-dependent decarboxylase domain containing 1
Synonyms 2210010A19Rik; AA415817; Kiaa0251-hp
Species Mus musculus
Ensembl Gene ENSMUSG00000022680
Encoded Proteins
IDBP-134212
pyridoxal-dependent decarboxylase domain containing 1
IDBP-248830
pyridoxal-dependent decarboxylase domain containing 1
IDBP-248832
pyridoxal-dependent decarboxylase domain containing 1
IDBP-248834
pyridoxal-dependent decarboxylase domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000179889:
Gene Information
Type Protein coding
Genomic Location Chromosome 16:13833148-13903131
Strand Reverse strand
Band A1
Transcripts
ENSMUST00000023361 ENSMUSP00000023361
ENSMUST00000115804 ENSMUSP00000111471
ENSMUST00000115803 ENSMUSP00000111469
ENSMUST00000115802 ENSMUSP00000111468
ENSMUST00000150435
ENSMUST00000127432
ENSMUST00000152450
ENSMUST00000154150
ENSMUST00000124860
ENSMUST00000144913
ENSMUST00000148848
ENSMUST00000139859
ENSMUST00000151774
ENSMUST00000148551
ENSMUST00000137715
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 10 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 10 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0016831 carboxy-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0008150 biological_process
GO:0019752 carboxylic acid metabolic process
Cellular Component
GO:0005794 Golgi apparatus
GO:0043231 intracellular membrane-bounded organelle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000179889
View Gene Order
ENSBTAG00000004801
Not yet available
Cross-References
SwissProt Q99K01
TrEMBL D3YZA7
UniProt Splice Variant
Entrez Gene 94184
UniGene Mm.171484 Mm.399067 Mm.463393 Mm.474979
RefSeq NM_001039533 NM_001291017 NM_053181 XM_006522787 XM_006522789 XM_006522790
OMIM
CCDS CCDS37261 CCDS70685
HPRD
IMGT
MGI ID MGI:1920909
MGI Symbol Pdxdc1
EMBL AC107769 AK004611 AK030613 AK033107 AK054329 AK075829 AK163696 AK165587 AK170661 BC005541
GenPept AAH05541 BAB23408 BAC27047 BAC28155 BAC35732 BAC35991 BAE37462 BAE38276 BAE41943
RNA Seq Atlas 94184

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca