Version 5.4
| Mus musculus Gene: Col10a1 | |||||||
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| Summary | |||||||
| InnateDB Gene | IDBG-143867.6 | ||||||
| Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||
| Gene Symbol | Col10a1 | ||||||
| Gene Name | collagen, type X, alpha 1 | ||||||
| Synonyms | Col10; Col10a-1; | ||||||
| Species | Mus musculus | ||||||
| Ensembl Gene | ENSMUSG00000039462 | ||||||
| Encoded Proteins |
collagen, type X, alpha 1
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| Protein Structure |
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| Useful resources | Stemformatics EHFPI ImmGen | ||||||
| Entrez Gene | |||||||
| Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000123500:
This gene encodes the alpha chain of type X collagen, a short chain collagen expressed by hypertrophic chondrocytes during endochondral ossification. Unlike type VIII collagen, the other short chain collagen, type X collagen is a homotrimer. Mutations in this gene are associated with Schmid type metaphyseal chondrodysplasia (SMCD) and Japanese type spondylometaphyseal dysplasia (SMD). [provided by RefSeq, Jul 2008] |
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| Gene Information | |||||||
| Type | Protein coding | ||||||
| Genomic Location | Chromosome 10:34389981-34397085 | ||||||
| Strand | Forward strand | ||||||
| Band | B1 | ||||||
| Transcripts |
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| Interactions | |||||||
| Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
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| Gene Ontology | |||||||
Molecular Function |
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| Biological Process |
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| Cellular Component |
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| Orthologs | |||||||
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Species
Homo sapiens
Bos taurus
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Gene ID
Gene Order
Method
Confidence
Comments
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| Pathways | |||||||
| NETPATH | |||||||
| REACTOME |
Collagen formation pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Integrin cell surface interactions pathway
Non-integrin membrane-ECM interactions pathway
Degradation of the extracellular matrix pathway
Collagen degradation pathway
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| KEGG | |||||||
| INOH |
Integrin signaling pathway pathway
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| PID BIOCARTA | |||||||
| PID NCI | |||||||
| Pathway Predictions based on Human Orthology Data | |||||||
| NETPATH | |||||||
| REACTOME |
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Integrin cell surface interactions pathway
Non-integrin membrane-ECM interactions pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen degradation pathway
Collagen formation pathway
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| KEGG | |||||||
| INOH |
Integrin signaling pathway pathway
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| PID BIOCARTA | |||||||
| PID NCI | |||||||
| Cross-References | |||||||
| SwissProt | Q05306 | ||||||
| TrEMBL | |||||||
| UniProt Splice Variant | |||||||
| Entrez Gene | 12813 | ||||||
| UniGene | Mm.443177 | ||||||
| RefSeq | NM_009925 | ||||||
| OMIM | |||||||
| CCDS | CCDS23780 | ||||||
| HPRD | |||||||
| IMGT | |||||||
| MGI ID | MGI:88445 | ||||||
| MGI Symbol | Col10a1 | ||||||
| EMBL | X63013 X65121 X67348 Z21610 | ||||||
| GenPept | CAA44741 CAA46237 CAA47763 CAA79736 | ||||||
| RNA Seq Atlas | 12813 | ||||||