Mus musculus Gene: Col10a1 | |||||||
---|---|---|---|---|---|---|---|
Summary | |||||||
InnateDB Gene | IDBG-143867.6 | ||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||
Gene Symbol | Col10a1 | ||||||
Gene Name | collagen, type X, alpha 1 | ||||||
Synonyms | Col10; Col10a-1; | ||||||
Species | Mus musculus | ||||||
Ensembl Gene | ENSMUSG00000039462 | ||||||
Encoded Proteins |
collagen, type X, alpha 1
|
||||||
Protein Structure |
![]() |
||||||
Useful resources | Stemformatics EHFPI ImmGen | ||||||
Entrez Gene | |||||||
Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000123500:
This gene encodes the alpha chain of type X collagen, a short chain collagen expressed by hypertrophic chondrocytes during endochondral ossification. Unlike type VIII collagen, the other short chain collagen, type X collagen is a homotrimer. Mutations in this gene are associated with Schmid type metaphyseal chondrodysplasia (SMCD) and Japanese type spondylometaphyseal dysplasia (SMD). [provided by RefSeq, Jul 2008] |
||||||
Gene Information | |||||||
Type | Protein coding | ||||||
Genomic Location | Chromosome 10:34389981-34397085 | ||||||
Strand | Forward strand | ||||||
Band | B1 | ||||||
Transcripts |
|
||||||
Interactions | |||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
|
||||||
Gene Ontology | |||||||
Molecular Function |
|
||||||
Biological Process |
|
||||||
Cellular Component |
|
||||||
Orthologs | |||||||
Species
Homo sapiens
Bos taurus
|
Gene ID
Gene Order
Method
Confidence
Comments
|
||||||
Pathways | |||||||
NETPATH | |||||||
REACTOME |
Collagen formation pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Integrin cell surface interactions pathway
Non-integrin membrane-ECM interactions pathway
Degradation of the extracellular matrix pathway
Collagen degradation pathway
|
||||||
KEGG | |||||||
INOH |
Integrin signaling pathway pathway
|
||||||
PID BIOCARTA | |||||||
PID NCI | |||||||
Pathway Predictions based on Human Orthology Data | |||||||
NETPATH | |||||||
REACTOME |
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Integrin cell surface interactions pathway
Non-integrin membrane-ECM interactions pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen degradation pathway
Collagen formation pathway
|
||||||
KEGG | |||||||
INOH |
Integrin signaling pathway pathway
|
||||||
PID BIOCARTA | |||||||
PID NCI | |||||||
Cross-References | |||||||
SwissProt | Q05306 | ||||||
TrEMBL | |||||||
UniProt Splice Variant | |||||||
Entrez Gene | 12813 | ||||||
UniGene | Mm.443177 | ||||||
RefSeq | NM_009925 | ||||||
OMIM | |||||||
CCDS | CCDS23780 | ||||||
HPRD | |||||||
IMGT | |||||||
MGI ID | MGI:88445 | ||||||
MGI Symbol | Col10a1 | ||||||
EMBL | X63013 X65121 X67348 Z21610 | ||||||
GenPept | CAA44741 CAA46237 CAA47763 CAA79736 | ||||||
RNA Seq Atlas | 12813 | ||||||