Version 5.4
Mus musculus Gene: Snapc4
Summary
InnateDB Gene IDBG-148599.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Snapc4
Gene Name small nuclear RNA activating complex, polypeptide 4
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000036281
Encoded Proteins
IDBP-148601
small nuclear RNA activating complex, polypeptide 4
IDBP-252424
small nuclear RNA activating complex, polypeptide 4
IDBP-531668
small nuclear RNA activating complex, polypeptide 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000165684:
Gene Information
Type Protein coding
Genomic Location Chromosome 2:26362765-26380653
Strand Reverse strand
Band A3
Transcripts
ENSMUST00000035427 ENSMUSP00000041767
ENSMUST00000114115 ENSMUSP00000109750
ENSMUST00000135171
ENSMUST00000149850
ENSMUST00000136054
ENSMUST00000123934 ENSMUSP00000122456
ENSMUST00000149316
ENSMUST00000125789
ENSMUST00000148024
ENSMUST00000150121
ENSMUST00000133778
ENSMUST00000144871
ENSMUST00000124843
ENSMUST00000155643
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0042795 snRNA transcription from RNA polymerase II promoter
GO:0042796 snRNA transcription from RNA polymerase III promoter
Cellular Component
GO:0019185 snRNA-activating protein complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000165684
View Gene Order
ENSBTAG00000000054
Not yet available
Pathways
NETPATH
REACTOME
REACT_244415
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
REACT_233104
RNA Polymerase III Transcription Initiation pathway
REACT_261233
RNA Polymerase III Abortive And Retractive Initiation pathway
REACT_233572
Gene Expression pathway
REACT_237241
RNA Polymerase III Transcription pathway
REACT_240508
RNA Polymerase III Transcription Initiation From Type 3 Promoter pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_22339
RNA Polymerase III Abortive And Retractive Initiation pathway
REACT_571
RNA Polymerase III Transcription Initiation From Type 3 Promoter pathway
REACT_281
RNA Polymerase III Transcription Initiation pathway
REACT_1371
RNA Polymerase III Transcription pathway
REACT_21352
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.207460
RefSeq NM_001290419 NM_172339 XM_006497903 XM_006497904 XM_006497905
OMIM
CCDS CCDS15802
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca