Version 5.4
Homo sapiens Gene: SNAPC4
Summary
InnateDB Gene IDBG-92335.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNAPC4
Gene Name small nuclear RNA activating complex, polypeptide 4, 190kDa
Synonyms PTFalpha; SNAP190
Species Homo sapiens
Ensembl Gene ENSG00000165684
Encoded Proteins
IDBP-92337
small nuclear RNA activating complex, polypeptide 4, 190kDa
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 9:136375577-136398797
Strand Reverse strand
Band q34.3
Transcripts
ENST00000298532 ENSP00000298532
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 14 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 14 [view]
Protein-Protein 14 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 sequence-specific DNA binding transcription factor activity
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006383 transcription from RNA polymerase III promoter
GO:0009301 snRNA transcription
GO:0010467 gene expression
GO:0042795 snRNA transcription from RNA polymerase II promoter
GO:0042796 snRNA transcription from RNA polymerase III promoter
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0019185 snRNA-activating protein complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000036281
View Gene Order
ENSBTAG00000000054
Not yet available
Pathways
NETPATH
REACTOME
REACT_22339
RNA Polymerase III Abortive And Retractive Initiation pathway
REACT_571
RNA Polymerase III Transcription Initiation From Type 3 Promoter pathway
REACT_281
RNA Polymerase III Transcription Initiation pathway
REACT_1371
RNA Polymerase III Transcription pathway
REACT_21352
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q5SXM2
TrEMBL A0A024R8F4
UniProt Splice Variant
Entrez Gene 6621
UniGene Hs.113265
RefSeq NM_003086 XM_005266096 XM_006717241 XM_006717242
HUGO HGNC:11137
OMIM 602777
CCDS CCDS6998
HPRD 04146
IMGT
EMBL AF032387 AL592301 CH471090
GenPept AAC02972 CAI13935 EAW88225 EAW88226 EAW88227
RNA Seq Atlas 6621

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca