Version 5.4
Mus musculus Gene: Podxl2
Summary
InnateDB Gene IDBG-167438.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Podxl2
Gene Name podocalyxin-like 2
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000033152
Encoded Proteins
IDBP-167440
podocalyxin-like 2
IDBP-167442
podocalyxin-like 2
IDBP-538910
podocalyxin-like 2
IDBP-542217
podocalyxin-like 2
IDBP-534964
podocalyxin-like 2
IDBP-536248
podocalyxin-like 2
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000114631:
This gene is a member of the CD34 family of cell surface transmembrane proteins, which are characterized by an N-terminal extracellular mucin domain, globular and stalk domains, a single pass transmembrane region, and a charged cytoplasmic tail. The encoded protein is a ligand for vascular selectins. [provided by RefSeq, Oct 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:88842558-88875044
Strand Reverse strand
Band D1
Transcripts
ENSMUST00000061262 ENSMUSP00000058985
ENSMUST00000038409 ENSMUSP00000040417
ENSMUST00000141401
ENSMUST00000124562
ENSMUST00000141348 ENSMUSP00000121139
ENSMUST00000145944 ENSMUSP00000117954
ENSMUST00000140455 ENSMUSP00000120870
ENSMUST00000145780 ENSMUSP00000120460
ENSMUST00000142266
ENSMUST00000153852
ENSMUST00000135843
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0050901 leukocyte tethering or rolling
Cellular Component
GO:0005575 cellular_component
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000114631
View Gene Order
ENSBTAG00000018031
Not yet available
Cross-References
SwissProt
TrEMBL D3YW47 D3YZ50
UniProt Splice Variant
Entrez Gene 319655
UniGene Mm.302613 Mm.483545
RefSeq NM_176973 XM_006506246 XM_006506247 XM_006506248 XM_006506249
OMIM
CCDS CCDS20340
HPRD
IMGT
MGI ID MGI:2442488
MGI Symbol Podxl2
EMBL AC153923
GenPept
RNA Seq Atlas 319655

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca