Version 5.4
Homo sapiens Gene: PODXL2
Summary
InnateDB Gene IDBG-54937.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PODXL2
Gene Name podocalyxin-like 2
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000114631
Encoded Proteins
IDBP-54939
podocalyxin-like 2
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is a member of the CD34 family of cell surface transmembrane proteins, which are characterized by an N-terminal extracellular mucin domain, globular and stalk domains, a single pass transmembrane region, and a charged cytoplasmic tail. The encoded protein is a ligand for vascular selectins. [provided by RefSeq, Oct 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:127629181-127672809
Strand Forward strand
Band q21.3
Transcripts
ENST00000342480 ENSP00000345359
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0005539 glycosaminoglycan binding
Biological Process
GO:0050901 leukocyte tethering or rolling
Cellular Component
GO:0005887 integral component of plasma membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000033152
View Gene Order
ENSBTAG00000018031
Not yet available
Cross-References
SwissProt Q9NZ53
TrEMBL
UniProt Splice Variant
Entrez Gene 50512
UniGene Hs.591290
RefSeq NM_015720
HUGO HGNC:17936
OMIM
CCDS CCDS3044
HPRD
IMGT
EMBL AF219137 AY359096 BC019330 BC052585
GenPept AAF44629 AAH19330 AAH52585 AAQ89454
RNA Seq Atlas 50512

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca