Version 5.4
Mus musculus Gene: Hmg20b
Summary
InnateDB Gene IDBG-178149.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Hmg20b
Gene Name high mobility group 20B
Synonyms AW610687; BRAF35; Hmgx2; Hmgxb2; Smarce1r
Species Mus musculus
Ensembl Gene ENSMUSG00000020232
Encoded Proteins
IDBP-178151
high mobility group 20 B
IDBP-271116
high mobility group 20 B
IDBP-271118
high mobility group 20 B
IDBP-710735
IDBP-539469
high mobility group 20 B
IDBP-537015
high mobility group 20 B
IDBP-623884
high mobility group 20 B
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000064961:
Gene Information
Type Protein coding
Genomic Location Chromosome 10:81346048-81350480
Strand Reverse strand
Band C1
Transcripts
ENSMUST00000020454 ENSMUSP00000020454
ENSMUST00000105324 ENSMUSP00000100961
ENSMUST00000105323 ENSMUSP00000100960
ENSMUST00000132313
ENSMUST00000122993 ENSMUSP00000137861
ENSMUST00000134857
ENSMUST00000141171 ENSMUSP00000117322
ENSMUST00000154609 ENSMUSP00000115459
ENSMUST00000140268
ENSMUST00000148839
ENSMUST00000129482
ENSMUST00000140160
ENSMUST00000167481 ENSMUSP00000128807
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 18 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 18 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000400 four-way junction DNA binding
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007049 cell cycle
GO:0033234 negative regulation of protein sumoylation
GO:0035914 skeletal muscle cell differentiation
GO:0045666 positive regulation of neuron differentiation
Cellular Component
GO:0000794 condensed nuclear chromosome
GO:0002111 BRCA2-BRAF35 complex
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Gene ID
Gene Order
ENSG00000064961
View Gene Order
Pathways
NETPATH
REACTOME
REACT_218274
Chromatin organization pathway
REACT_224553
Hemostasis pathway
REACT_202766
Chromatin modifying enzymes pathway
REACT_198649
Factors involved in megakaryocyte development and platelet production pathway
REACT_257106
HDACs deacetylate histones pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_24970
Factors involved in megakaryocyte development and platelet production pathway
REACT_228222
HDACs deacetylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
REACT_604
Hemostasis pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.38474
RefSeq NM_001163165 NM_001163166 NM_010440 XM_006513248 XM_006513249
OMIM
CCDS CCDS24055
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca