Version 5.4
Mus musculus Gene: Csde1
Summary
InnateDB Gene IDBG-180853.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Csde1
Gene Name cold shock domain containing E1, RNA binding
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000068823
Encoded Proteins
IDBP-180857
cold shock domain containing E1, RNA binding
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000009307:
Gene Information
Type Protein coding
Genomic Location Chromosome 3:103020546-103058189
Strand Forward strand
Band F2.2
Transcripts
ENSMUST00000029446 ENSMUSP00000029446
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 16 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay
Cellular Component
GO:0005737 cytoplasm
GO:0005743 mitochondrial inner membrane
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0070937 CRD-mediated mRNA stability complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000009307
View Gene Order
ENSBTAG00000000678
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
INOH
PID NCI
myc_represspathway
Validated targets of C-MYC transcriptional repression
Cross-References
SwissProt Q91W50
TrEMBL Q05C63 Q3U1S6 Q3U672
UniProt Splice Variant
Entrez Gene 229663
UniGene Mm.277713 Mm.373998 Mm.470121
RefSeq NM_001161854 NM_144901
OMIM
CCDS CCDS38569
HPRD
IMGT
MGI ID MGI:92356
MGI Symbol Csde1
EMBL AK146706 AK152777 AK153263 AK155751 BC016898 BC029058 BC062097
GenPept AAH16898 AAH29058 AAH62097 BAE27372 BAE31489 BAE31853 BAE33417
RNA Seq Atlas 229663

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca