Mus musculus Gene: Znrd1
Summary
InnateDB Gene IDBG-181941.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Znrd1
Gene Name zinc ribbon domain containing, 1
Synonyms 1110014N07Rik; Rpa12;
Species Mus musculus
Ensembl Gene ENSMUSG00000036315
Encoded Proteins
zinc ribbon domain containing, 1
zinc ribbon domain containing, 1
zinc ribbon domain containing, 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000066379:
This gene encodes a protein with similarity to the Saccharomyces cerevisiae Rpa12p subunit of RNA polymerase I. Alternate splicing of this gene results in two transcript variants encoding the same protein. Additional splice variants have been described, but their full-length sequences have not been determined. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 17:36954356-36958559
Strand Reverse strand
Band B1
Transcripts
ENSMUST00000113669 ENSMUSP00000109299
ENSMUST00000172518 ENSMUSP00000133651
ENSMUST00000172823 ENSMUSP00000133644
ENSMUST00000174466
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 15 interaction(s) predicted by orthology.
Predicted by orthology
Total 15 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0001054 RNA polymerase I activity
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006363 termination of RNA polymerase I transcription
Cellular Component
GO:0005654 nucleoplasm
GO:0005736 DNA-directed RNA polymerase I complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
RNA Polymerase I Transcription pathway
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
Mus musculus biological processes pathway
NoRC negatively regulates rRNA expression pathway
RNA Polymerase I Transcription Termination pathway
NoRC negatively regulates rRNA expression pathway
Epigenetic regulation of gene expression pathway
Gene Expression pathway
Negative epigenetic regulation of rRNA expression pathway
RNA Polymerase I Promoter Escape pathway
RNA Polymerase I Promoter Clearance pathway
RNA Polymerase I Chain Elongation pathway
RNA Polymerase I Transcription Initiation pathway
KEGG
Purine metabolism pathway
Pyrimidine metabolism pathway
RNA polymerase pathway
INOH
PID BIOCARTA
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
RNA Polymerase I Transcription pathway
RNA Polymerase I Promoter Escape pathway
Epigenetic regulation of gene expression pathway
RNA Polymerase I Promoter Clearance pathway
NoRC negatively regulates rRNA expression pathway
RNA Polymerase I Transcription Termination pathway
RNA Polymerase I Chain Elongation pathway
RNA Polymerase I Transcription Initiation pathway
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
Gene Expression pathway
Negative epigenetic regulation of rRNA expression pathway
RNA Polymerase I Transcription Termination pathway
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
RNA Polymerase I Promoter Escape pathway
RNA Polymerase I Transcription pathway
Gene Expression pathway
RNA Polymerase I Chain Elongation pathway
RNA Polymerase I Transcription Initiation pathway
RNA Polymerase I Promoter Clearance pathway
KEGG
Purine metabolism pathway
Pyrimidine metabolism pathway
RNA polymerase pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q791N7
TrEMBL
UniProt Splice Variant
Entrez Gene 66136
UniGene
RefSeq XM_006524792 XM_006536683 XM_006536850 XM_006537414 NM_023162
OMIM
CCDS CCDS28730
HPRD
IMGT
MGI ID MGI:1913386
MGI Symbol Znrd1
EMBL AF230339 AF230340 AK003714 AK005976 BC043016
GenPept AAG50161 AAG50162 AAH43016 BAB22954 BAB24350
RNA Seq Atlas 66136