Version 5.4
Mus musculus Gene: Snrpf
Summary
InnateDB Gene IDBG-186208.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Snrpf
Gene Name small nuclear ribonucleoprotein polypeptide F
Synonyms 2010013O18Rik; sm-F; SMF; snRNP-F
Species Mus musculus
Ensembl Gene ENSMUSG00000020018
Encoded Proteins
IDBP-186210
small nuclear ribonucleoprotein polypeptide F
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000139343:
Gene Information
Type Protein coding
Genomic Location Chromosome 10:93583029-93589706
Strand Reverse strand
Band C2
Transcripts
ENSMUST00000020203 ENSMUSP00000020203
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 44 interaction(s) predicted by orthology.
Experimentally validated
Total 9 [view]
Protein-Protein 9 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 44 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000387 spliceosomal snRNP assembly
GO:0006396 RNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005683 U7 snRNP
GO:0005685 U1 snRNP
GO:0005687 U4 snRNP
GO:0005689 U12-type spliceosomal complex
GO:0005829 cytosol
GO:0030532 small nuclear ribonucleoprotein complex
GO:0034709 methylosome
GO:0034715 pICln-Sm protein complex
GO:0034719 SMN-Sm protein complex
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000139343
View Gene Order
ENSBTAG00000016271
Not yet available
Pathways
NETPATH
REACTOME
REACT_249110
mRNA Splicing pathway
REACT_215668
SLBP independent Processing of Histone Pre-mRNAs pathway
REACT_235610
mRNA Splicing - Minor Pathway pathway
REACT_248407
Processing of Capped Intronless Pre-mRNA pathway
REACT_224866
Metabolism of non-coding RNA pathway
REACT_257346
RNA Polymerase II Transcription Termination pathway
REACT_253727
Cleavage of Growing Transcript in the Termination Region pathway
REACT_206812
snRNP Assembly pathway
REACT_233572
Gene Expression pathway
REACT_235695
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs pathway
REACT_260226
mRNA Splicing - Major Pathway pathway
REACT_233950
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_242255
RNA Polymerase II Transcription pathway
KEGG
mmu03040
Spliceosome pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_11066
snRNP Assembly pathway
REACT_185
SLBP independent Processing of Histone Pre-mRNAs pathway
REACT_1364
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs pathway
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_1753
mRNA Splicing - Minor Pathway pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_387
Cleavage of Growing Transcript in the Termination Region pathway
REACT_894
RNA Polymerase II Transcription Termination pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_11052
Metabolism of non-coding RNA pathway
REACT_1768
Processing of Capped Intronless Pre-mRNA pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
REACT_209718
RNA Polymerase II Transcription pathway
REACT_224643
Cleavage of Growing Transcript in the Termination Region pathway
REACT_205948
mRNA Splicing - Major Pathway pathway
REACT_206725
mRNA Splicing pathway
REACT_204974
Processing of Capped Intronless Pre-mRNA pathway
REACT_224606
RNA Polymerase II Transcription Termination pathway
REACT_226022
Gene Expression pathway
REACT_219798
SLBP independent Processing of Histone Pre-mRNAs pathway
REACT_226302
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_206124
Metabolism of non-coding RNA pathway
REACT_216313
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs pathway
REACT_224480
snRNP Assembly pathway
REACT_217207
mRNA Splicing - Minor Pathway pathway
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt P62307
TrEMBL Q497K3 Q6NZQ3
UniProt Splice Variant
Entrez Gene 69878
UniGene Mm.34095
RefSeq NM_027246 XM_006537099 XM_006539426 XM_006543919
OMIM
CCDS CCDS48672
HPRD
IMGT
MGI ID MGI:1917128
MGI Symbol Snrpf
EMBL AK008240 BC066015 BC100499 CH466539
GenPept AAH66015 AAI00500 BAB25551 EDL21562
RNA Seq Atlas 102638183 69878

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca