Homo sapiens Gene: SNRPF
Summary
InnateDB Gene IDBG-51824.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNRPF
Gene Name small nuclear ribonucleoprotein polypeptide F
Synonyms Sm-F; SMF; snRNP-F;
Species Homo sapiens
Ensembl Gene ENSG00000139343
Encoded Proteins
small nuclear ribonucleoprotein polypeptide F
small nuclear ribonucleoprotein polypeptide F
small nuclear ribonucleoprotein polypeptide F
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 12:95858928-95903828
Strand Forward strand
Band q23.1
Transcripts
ENST00000266735 ENSP00000266735
ENST00000551316
ENST00000553192 ENSP00000447751
ENST00000552085 ENSP00000447127
ENST00000549580
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 86 experimentally validated interaction(s) in this database.
Experimentally validated
Total 86 [view]
Protein-Protein 83 [view]
Protein-DNA 2 [view]
Protein-RNA 1 [view]
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000387 spliceosomal snRNP assembly
GO:0000398 mRNA splicing, via spliceosome
GO:0006366 transcription from RNA polymerase II promoter
GO:0006369 termination of RNA polymerase II transcription
GO:0006396 RNA processing
GO:0008334 histone mRNA metabolic process
GO:0008380 RNA splicing
GO:0010467 gene expression
GO:0016070 RNA metabolic process
GO:0031124 mRNA 3'-end processing
GO:0034660 ncRNA metabolic process
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005683 U7 snRNP
GO:0005685 U1 snRNP
GO:0005687 U4 snRNP
GO:0005689 U12-type spliceosomal complex
GO:0005829 cytosol
GO:0030532 small nuclear ribonucleoprotein complex
GO:0034709 methylosome
GO:0034715 pICln-Sm protein complex
GO:0034719 SMN-Sm protein complex
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
SLBP independent Processing of Histone Pre-mRNAs pathway
RNA Polymerase II Transcription Termination pathway
mRNA Splicing - Minor Pathway pathway
Processing of Capped Intron-Containing Pre-mRNA pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs pathway
RNA Polymerase II Transcription pathway
Metabolism of non-coding RNA pathway
Processing of Capped Intronless Pre-mRNA pathway
mRNA Splicing pathway
Cleavage of Growing Transcript in the Termination Region pathway
snRNP Assembly pathway
Gene Expression pathway
mRNA Splicing - Major Pathway pathway
KEGG
Spliceosome pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.733158
RefSeq NM_003095
HUGO
OMIM
CCDS CCDS9055
HPRD 04645
IMGT
EMBL
GenPept
RNA Seq Atlas