Version 5.4
Mus musculus Gene: Sfpq
Summary
InnateDB Gene IDBG-189416.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sfpq
Gene Name splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Synonyms 1110004P21Rik; 2810416M14Rik; 5730453G22Rik; 9030402K04Rik; AU021830; D4Ertd314e; Gm12940; OTTMUSG00000009329; PSF; REP1
Species Mus musculus
Ensembl Gene ENSMUSG00000028820
Encoded Proteins
IDBP-189418
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000116560:
Gene Information
Type Protein coding
Genomic Location Chromosome 4:127021324-127037013
Strand Forward strand
Band D2.2
Transcripts
ENSMUST00000030623 ENSMUSP00000030623
ENSMUST00000140682
ENSMUST00000146285
ENSMUST00000144630
ENSMUST00000143168
ENSMUST00000125453
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 20 experimentally validated interaction(s) in this database.
They are also associated with 119 interaction(s) predicted by orthology.
Experimentally validated
Total 20 [view]
Protein-Protein 20 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 119 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0000380 alternative mRNA splicing, via spliceosome
GO:0006281 DNA repair
GO:0006351 transcription, DNA-templated
GO:0042754 negative regulation of circadian rhythm
GO:0045892 negative regulation of transcription, DNA-templated
GO:0070932 histone H3 deacetylation
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016363 nuclear matrix
GO:0042382 paraspeckles
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000116560
View Gene Order
ENSBTAG00000016328
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
NetPath_4
EGFR1 pathway
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.257276
RefSeq NM_023603 XM_006503405
OMIM
CCDS CCDS18662
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca