Version 5.4
Mus musculus Gene: Ybx2
Summary
InnateDB Gene IDBG-192820.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ybx2
Gene Name Y box protein 2
Synonyms Msy2;
Species Mus musculus
Ensembl Gene ENSMUSG00000018554
Encoded Proteins
IDBP-192824
Y box protein 2
IDBP-264188
Y box protein 2
IDBP-719092
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000006047:
This gene encodes a nucleic acid binding protein which is highly expressed in germ cells. The encoded protein binds to a Y-box element in the promoters of certain genes but also binds to mRNA transcribed from these genes. Pseudogenes for this gene are located on chromosome 10 and 15. [provided by RefSeq, Feb 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:69935796-69941605
Strand Forward strand
Band B3
Transcripts
ENSMUST00000018698 ENSMUSP00000018698
ENSMUST00000108601 ENSMUSP00000104242
ENSMUST00000149194 ENSMUSP00000136684
ENSMUST00000130377
ENSMUST00000148395
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 6 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 6 [view]
Protein-Protein 6 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003729 mRNA binding
GO:0003730 mRNA 3'-UTR binding
GO:0008289 lipid binding
GO:0043021 ribonucleoprotein complex binding
GO:0045182 translation regulator activity
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0007286 spermatid development
GO:0017148 negative regulation of translation
GO:0048255 mRNA stabilization
GO:0048477 oogenesis
GO:0048599 oocyte development
GO:0051100 negative regulation of binding
Cellular Component
GO:0005737 cytoplasm
GO:0005844 polysome
GO:0030529 ribonucleoprotein complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
ENSG00000006047
View Gene Order
Ortholuge
SSD Ortholog
Ortholog supports species divergence
ENSBTAG00000009126
Not yet available
Ortholuge
SSD Ortholog
Ortholog supports species divergence
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.29286
RefSeq NM_016875 XM_006533738 XM_006533740 XM_006533741 XM_006537178 XM_006537180 XM_006537181
OMIM
CCDS CCDS36200
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca