Version 5.4
Mus musculus Gene: Arntl2
Summary
InnateDB Gene IDBG-198494.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Arntl2
Gene Name aryl hydrocarbon receptor nuclear translocator-like 2
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000040187
Encoded Proteins
IDBP-198496
aryl hydrocarbon receptor nuclear translocator-like 2
IDBP-257689
aryl hydrocarbon receptor nuclear translocator-like 2
IDBP-257691
aryl hydrocarbon receptor nuclear translocator-like 2
IDBP-257693
aryl hydrocarbon receptor nuclear translocator-like 2
IDBP-531700
aryl hydrocarbon receptor nuclear translocator-like 2
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000029153:
This gene encodes a basic helix-loop-helix transcription factor belonging to the PAS (PER, ARNT, SIM) superfamily. The PAS proteins play important roles in adaptation to low atmospheric and cellular oxygen levels, exposure to certain environmental pollutants, and diurnal oscillations in light and temperature. This protein forms a transcriptionally active heterodimer with the circadian CLOCK protein, the structurally related MOP4, and hypoxia-inducible factors, such as HIF1alpha. Consistent with its role as a biologically relevant partner of circadian and hypoxia factors, this protein is coexpressed in regions of the brain such as the thalamus, hypothalamus, and amygdala. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Oct 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:146796055-146833529
Strand Forward strand
Band G3
Transcripts
ENSMUST00000080530 ENSMUSP00000079373
ENSMUST00000111639 ENSMUSP00000107266
ENSMUST00000111638 ENSMUSP00000107265
ENSMUST00000111636 ENSMUSP00000107263
ENSMUST00000123444
ENSMUST00000129788 ENSMUSP00000121170
ENSMUST00000136594
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000982 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0004871 signal transducer activity
GO:0005515 protein binding
GO:0046983 protein dimerization activity
GO:0070888 E-box binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0007165 signal transduction
GO:0007623 circadian rhythm
GO:0042753 positive regulation of circadian rhythm
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005730 nucleolus
GO:0005737 cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000029153
View Gene Order
ENSBTAG00000011804
Not yet available
Pathways
NETPATH
REACTOME
REACT_241925
Circadian Clock pathway
REACT_198620
BMAL1:CLOCK,NPAS2 activates circadian gene expression pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_111118
BMAL1:CLOCK,NPAS2 activates circadian gene expression pathway
REACT_24941
Circadian Clock pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q2VPD4
TrEMBL
UniProt Splice Variant
Entrez Gene 272322
UniGene Mm.442075
RefSeq NM_172309 NM_001289679 NM_001289680 XM_006507053 XM_006507054 XM_006536083 XM_006536084
OMIM
CCDS CCDS20702
HPRD
IMGT
MGI ID MGI:2684845
MGI Symbol Arntl2
EMBL AY005163 AY014836 BC108965 BC108966
GenPept AAF88141 AAI08966 AAI08967 AAK12619
RNA Seq Atlas 272322

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca