Version 5.4
Mus musculus Gene: Vmp1
Summary
InnateDB Gene IDBG-206972.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vmp1
Gene Name vacuole membrane protein 1
Synonyms 3110098I04Rik; 4930579A11Rik; AI787464; ni-2; Tango5; Tmem49
Species Mus musculus
Ensembl Gene ENSMUSG00000018171
Encoded Proteins
IDBP-206974
vacuole membrane protein 1
IDBP-531715
vacuole membrane protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000062716:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:86583865-86683836
Strand Reverse strand
Band C
Transcripts
ENSMUST00000018315 ENSMUSP00000018315
ENSMUST00000123590
ENSMUST00000145846
ENSMUST00000150176
ENSMUST00000153971
ENSMUST00000127267
ENSMUST00000139040
ENSMUST00000143991 ENSMUSP00000118302
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006914 autophagy
GO:0007566 embryo implantation
GO:0010506 regulation of autophagy
GO:0016337 single organismal cell-cell adhesion
GO:0034329 cell junction assembly
Cellular Component
GO:0000407 pre-autophagosomal structure
GO:0000421 autophagic vacuole membrane
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0016021 integral component of membrane
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000062716
View Gene Order
ENSBTAG00000011623
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.390398
RefSeq NM_029478 XM_006534402 XM_006534403
OMIM
CCDS CCDS25203
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca