Mus musculus Gene: Vmp1
Summary
InnateDB Gene IDBG-206972.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vmp1
Gene Name vacuole membrane protein 1
Synonyms 3110098I04Rik; 4930579A11Rik; AI787464; ni-2; Tango5; Tmem49;
Species Mus musculus
Ensembl Gene ENSMUSG00000018171
Encoded Proteins
vacuole membrane protein 1
vacuole membrane protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000062716:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:86583865-86683836
Strand Reverse strand
Band C
Transcripts
ENSMUST00000018315 ENSMUSP00000018315
ENSMUST00000123590
ENSMUST00000145846
ENSMUST00000150176
ENSMUST00000153971
ENSMUST00000127267
ENSMUST00000139040
ENSMUST00000143991 ENSMUSP00000118302
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006914 autophagy
GO:0007566 embryo implantation
GO:0010506 regulation of autophagy
GO:0016337 single organismal cell-cell adhesion
GO:0034329 cell junction assembly
Cellular Component
GO:0000407 pre-autophagosomal structure
GO:0000421 autophagic vacuole membrane
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0016021 integral component of membrane
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Cross-References
SwissProt
TrEMBL Q5SXR2
UniProt Splice Variant
Entrez Gene 75909
UniGene Mm.390398
RefSeq NM_029478 XM_006534402 XM_006534403
OMIM
CCDS CCDS25203
HPRD
IMGT
MGI ID MGI:1923159
MGI Symbol Vmp1
EMBL AL592222 AL604063
GenPept
RNA Seq Atlas 75909