Version 5.4
Mus musculus Gene: Ptcd1
Summary
InnateDB Gene IDBG-208560.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ptcd1
Gene Name pentatricopeptide repeat domain 1
Synonyms 1110069M14Rik
Species Mus musculus
Ensembl Gene ENSMUSG00000029624
Encoded Proteins
IDBP-208562
pentatricopeptide repeat domain 1
IDBP-532072
pentatricopeptide repeat domain 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000248919:
This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 5:145147514-145167108
Strand Reverse strand
Band G2
Transcripts
ENSMUST00000031628 ENSMUSP00000031628
ENSMUST00000161390 ENSMUSP00000125276
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000049 tRNA binding
GO:0003674 molecular_function
Biological Process
GO:0008150 biological_process
GO:0042780 tRNA 3'-end processing
Cellular Component
GO:0005759 mitochondrial matrix
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000248919
View Gene Order
ENSBTAG00000020440
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene 71799
UniGene Mm.474456
RefSeq NM_133735
OMIM
CCDS CCDS19858
HPRD
IMGT
MGI ID MGI:1919049
MGI Symbol Ptcd1
EMBL
GenPept
RNA Seq Atlas 71799

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca