Mus musculus Gene: Col9a3
Summary
InnateDB Gene IDBG-213859.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Col9a3
Gene Name collagen, type IX, alpha 3
Synonyms AV006866;
Species Mus musculus
Ensembl Gene ENSMUSG00000027570
Encoded Proteins
collagen, type IX, alpha 3
collagen, type IX, alpha 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000092758:
This gene encodes one of the three alpha chains of type IX collagen, the major collagen component of hyaline cartilage. Type IX collagen, a heterotrimeric molecule, is usually found in tissues containing type II collagen, a fibrillar collagen. Mutations in this gene are associated with multiple epiphyseal dysplasia type 3. [provided by RefSeq, Jan 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:180597790-180622189
Strand Forward strand
Band H4
Transcripts
ENSMUST00000103059 ENSMUSP00000099348
ENSMUST00000132527 ENSMUSP00000128718
ENSMUST00000141056
ENSMUST00000129090
ENSMUST00000165879
ENSMUST00000165224
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0008584 male gonad development
GO:0008585 female gonad development
Cellular Component
GO:0005594 collagen type IX
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Not yet available
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Pathways
NETPATH
REACTOME
KEGG
Protein digestion and absorption pathway
INOH
PID BIOCARTA
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
Developmental Biology pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
NCAM signaling for neurite out-growth pathway
Degradation of the extracellular matrix pathway
NCAM1 interactions pathway
Axon guidance pathway
Signal Transduction pathway
Integrin cell surface interactions pathway
ECM proteoglycans pathway
Collagen degradation pathway
Signaling by PDGF pathway
Collagen formation pathway
KEGG
Protein digestion and absorption pathway
INOH
Integrin signaling pathway pathway
PID BIOCARTA
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.141312
RefSeq NM_009936 XM_006500552
OMIM
CCDS CCDS17180
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas