Bos taurus Gene: BT.10803
Summary
InnateDB Gene IDBG-640755.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol BT.10803
Gene Name Uncharacterized protein
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000015581
Encoded Proteins
Collagen alpha 3(IX) chainUncharacterized protein
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000092758:
This gene encodes one of the three alpha chains of type IX collagen, the major collagen component of hyaline cartilage. Type IX collagen, a heterotrimeric molecule, is usually found in tissues containing type II collagen, a fibrillar collagen. Mutations in this gene are associated with multiple epiphyseal dysplasia type 3. [provided by RefSeq, Jan 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:55019577-55040430
Strand Reverse strand
Band
Transcripts
ENSBTAT00000020699 ENSBTAP00000020699
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0008584 male gonad development
GO:0008585 female gonad development
Cellular Component
GO:0005576 extracellular region
GO:0005594 collagen type IX
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
Developmental Biology pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
NCAM signaling for neurite out-growth pathway
Degradation of the extracellular matrix pathway
NCAM1 interactions pathway
Axon guidance pathway
Signal Transduction pathway
Integrin cell surface interactions pathway
ECM proteoglycans pathway
Collagen degradation pathway
Signaling by PDGF pathway
Collagen formation pathway
KEGG
Protein digestion and absorption pathway
Protein digestion and absorption pathway
INOH
Integrin signaling pathway pathway
PID BIOCARTA
PID NCI
Cross-References
SwissProt
TrEMBL F6R9Y9 Q7M2Q5
UniProt Splice Variant
Entrez Gene 789493
UniGene Bt.10803 Bt.110083
RefSeq
HUGO HGNC:2219
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02036242 DAAA02036243 DAAA02036244 DAAA02036245 DAAA02036246
GenPept
RNA Seq Atlas 789493
Transcript Frequencies
Tag Count based mRNA-Abundances across 87 different Tissues (TPM).

Based on Data from Bovine Gene Atlas

Tag Count based mRNA-Abundances across 87 different Tissues (TPM)

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