Version 5.4
Homo sapiens Gene: YTHDC2
Summary
InnateDB Gene IDBG-37505.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol YTHDC2
Gene Name YTH domain containing 2
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000047188
Encoded Proteins
IDBP-37507
YTH domain containing 2
IDBP-473816
YTH domain containing 2
IDBP-478424
YTH domain containing 2
IDBP-481365
YTH domain containing 2
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 5:113513683-113595285
Strand Forward strand
Band q22.2
Transcripts
ENST00000161863 ENSP00000161863
ENST00000503857 ENSP00000426644
ENST00000515883 ENSP00000423101
ENST00000514720 ENSP00000422916
ENST00000506333
ENST00000512600
ENST00000507567
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 20 experimentally validated interaction(s) in this database.
Experimentally validated
Total 20 [view]
Protein-Protein 17 [view]
Protein-DNA 3 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008186 RNA-dependent ATPase activity
GO:0044822 poly(A) RNA binding
GO:0070063 RNA polymerase binding
Biological Process
GO:0006200 ATP catabolic process
GO:0008152 metabolic process
GO:0034612 response to tumor necrosis factor
GO:0044829 positive regulation by host of viral genome replication
GO:0070555 response to interleukin-1
Cellular Component
GO:0005783 endoplasmic reticulum
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000034653
View Gene Order
ENSBTAG00000014099
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.231942 Hs.604353
RefSeq NM_022828 XM_005272052
HUGO
OMIM
CCDS CCDS4113
HPRD 11690
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca