Version 5.4
Homo sapiens Gene: RRP9
Summary
InnateDB Gene IDBG-37702.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RRP9
Gene Name ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
Synonyms RNU3IP2; U3-55K
Species Homo sapiens
Ensembl Gene ENSG00000114767
Encoded Proteins
IDBP-37704
ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the WD-repeat protein family. The encoded protein is a component of the nucleolar small nuclear ribonucleoprotein particle (snoRNP) and is essential for 18s rRNA processing during ribosome synthesis. It contains seven WD domains required for nucleolar localization and specific interaction with the U3 small nucleolar RNA (U3 snoRNA). [provided by RefSeq, Oct 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:51933430-51941941
Strand Reverse strand
Band p21.2
Transcripts
ENST00000232888 ENSP00000232888
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 19 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 19 [view]
Protein-Protein 18 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006364 rRNA processing
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005732 small nucleolar ribonucleoprotein complex
GO:0030532 small nuclear ribonucleoprotein complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000041506
View Gene Order
ENSBTAG00000000670
Not yet available
Cross-References
SwissProt O43818
TrEMBL
UniProt Splice Variant
Entrez Gene 9136
UniGene Hs.153768
RefSeq NM_004704
HUGO HGNC:16829
OMIM
CCDS CCDS2837
HPRD
IMGT
EMBL AJ001340 AK313696 BC001113 BC009879 BC010048 BC023662 CH471055
GenPept AAH01113 AAH09879 AAH10048 AAH23662 BAG36443 CAA04687 EAW65159
RNA Seq Atlas 9136

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca