Version 5.4
Homo sapiens Gene: KDM3B
Summary
InnateDB Gene IDBG-47082.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol KDM3B
Gene Name lysine (K)-specific demethylase 3B
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000120733
Encoded Proteins
IDBP-47084
lysine (K)-specific demethylase 3B
IDBP-483374
lysine (K)-specific demethylase 3B
IDBP-484746
lysine (K)-specific demethylase 3B
IDBP-584346
lysine (K)-specific demethylase 3B
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 5:138352596-138437028
Strand Forward strand
Band q31.2
Transcripts
ENST00000314358 ENSP00000326563
ENST00000510866 ENSP00000425186
ENST00000512928
ENST00000507996 ENSP00000423012
ENST00000504095
ENST00000508386
ENST00000505756
ENST00000509468
ENST00000542866 ENSP00000439462
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 15 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 15 [view]
Protein-Protein 14 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 1 [view]
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016568 chromatin modification
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000038773
View Gene Order
ENSBTAG00000010063
Not yet available
Pathways
NETPATH
NetPath_24
TSLP pathway
REACTOME
REACT_228178
HDMs demethylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.483486 Hs.732183
RefSeq NM_016604
HUGO
OMIM
CCDS CCDS34242
HPRD 11055
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca