Version 5.4
Homo sapiens Gene: RBM4
Summary
InnateDB Gene IDBG-59531.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RBM4
Gene Name RNA binding motif protein 4
Synonyms LARK; RBM4A; ZCCHC21; ZCRB3A
Species Homo sapiens
Ensembl Gene ENSG00000173933
Encoded Proteins
IDBP-59533
RNA binding motif protein 4
IDBP-232467
RNA binding motif protein 4
IDBP-379242
RNA binding motif protein 4
IDBP-292441
RNA binding motif protein 4
IDBP-292442
RNA binding motif protein 4
IDBP-477778
RNA binding motif protein 4
IDBP-604290
RNA binding motif protein 4
IDBP-480998
RNA binding motif protein 4
IDBP-604293
RNA binding motif protein 4
IDBP-604294
RNA binding motif protein 4
IDBP-719123
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 11:66638617-66666682
Strand Forward strand
Band q13.2
Transcripts
ENST00000310092 ENSP00000309166
ENST00000398692 ENSP00000381680
ENST00000396053 ENSP00000413497
ENST00000408993 ENSP00000386561
ENST00000409406 ENSP00000386894
ENST00000510173 ENSP00000422301
ENST00000515838
ENST00000483858 ENSP00000435821
ENST00000506523 ENSP00000423572
ENST00000528039
ENST00000530235 ENSP00000432150
ENST00000532968 ENSP00000432020
ENST00000578778 ENSP00000464349
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 100 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 100 [view]
Protein-Protein 95 [view]
Protein-DNA 5 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003730 mRNA 3'-UTR binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0035198 miRNA binding
GO:0044822 poly(A) RNA binding
GO:0097157 pre-mRNA intronic binding
GO:0097158 pre-mRNA intronic pyrimidine-rich binding
Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome
GO:0002190 cap-independent translational initiation
GO:0002192 IRES-dependent translational initiation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0017148 negative regulation of translation
GO:0030154 cell differentiation
GO:0032055 negative regulation of translation in response to stress
GO:0035278 negative regulation of translation involved in gene silencing by miRNA
GO:0043153 entrainment of circadian clock by photoperiod
GO:0045947 negative regulation of translational initiation
GO:0046685 response to arsenic-containing substance
GO:0046822 regulation of nucleocytoplasmic transport
GO:0051149 positive regulation of muscle cell differentiation
GO:0051403 stress-activated MAPK cascade
GO:0097167 circadian regulation of translation
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0010494 cytoplasmic stress granule
GO:0016607 nuclear speck
Orthologs
Species
Bos taurus
Mus musculus
Gene ID
Gene Order
ENSBTAG00000031688
Not yet available
ENSMUSG00000094936
View Gene Order
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.728823
RefSeq NM_001198843 NM_001198844 NM_002896
HUGO
OMIM
CCDS CCDS41676 CCDS55776 CCDS55777
HPRD 03982
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca