InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Rbm4

Summary

InnateDB Gene

IDBG-702356.2

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Rbm4

Gene Name

RNA binding motif protein 4

Synonyms

4921506I22Rik; AI504630; AI506404; Lark2

Species

Mus musculus

Ensembl Gene

ENSMUSG00000094936

Encoded Proteins

IDBP-619831

RNA binding motif protein 4B

IDBP-619832

RNA binding motif protein 14

IDBP-704306

IDBP-704806

IDBP-704335

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000173933:

Gene Information

Type

Protein coding

Genomic Location

Chromosome 19:4784293-4793901

Strand

Reverse strand

Band

Transcripts

ENSMUST00000164376	ENSMUSP00000127564
ENSMUST00000164209	ENSMUSP00000129745
ENSMUST00000179189	ENSMUSP00000137174
ENSMUST00000180248	ENSMUSP00000137345
ENSMUST00000178615	ENSMUSP00000136254
ENSMUST00000179820

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.

Experimentally validated
Total	1 [view]
Protein-Protein	1 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	2 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003730	mRNA 3'-UTR binding
GO:0008270	zinc ion binding
GO:0035198	miRNA binding
GO:0036002	pre-mRNA binding
GO:0097157	pre-mRNA intronic binding
GO:0097158	pre-mRNA intronic pyrimidine-rich binding

Biological Process

GO:0000381	regulation of alternative mRNA splicing, via spliceosome
GO:0002190	cap-independent translational initiation
GO:0002192	IRES-dependent translational initiation
GO:0006397	mRNA processing
GO:0008380	RNA splicing
GO:0017148	negative regulation of translation
GO:0030154	cell differentiation
GO:0032055	negative regulation of translation in response to stress
GO:0035278	negative regulation of translation involved in gene silencing by miRNA
GO:0043153	entrainment of circadian clock by photoperiod
GO:0045947	negative regulation of translational initiation
GO:0046685	response to arsenic-containing substance
GO:0046822	regulation of nucleocytoplasmic transport
GO:0051149	positive regulation of muscle cell differentiation
GO:0051403	stress-activated MAPK cascade
GO:0097167	circadian regulation of translation

Cellular Component

GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0010494	cytoplasmic stress granule
GO:0016607	nuclear speck
GO:0048471	perinuclear region of cytoplasm

Orthologs

Species

Homo sapiens

Bos taurus

Gene ID

Gene Order

ENSG00000173933

View Gene Order

ENSBTAG00000031688

Not yet available

Cross-References

SwissProt

TrEMBL

Q5CZX8

UniProt Splice Variant

Entrez Gene

66704

UniGene

Mm.426069 Mm.447455

RefSeq

NM_001290122 NM_001290123 NM_001290127 NM_009032 XM_006531800 XM_006531801

OMIM

CCDS

CCDS29436

HPRD

IMGT

MGI ID

MGI:1100865

MGI Symbol

Rbm4

EMBL

AC147618 BC090633 BC144950 CH466612

GenPept

AAH90633 AAI44951 EDL33061

RNA Seq Atlas

19653 56275 66704