Homo sapiens Gene: COL23A1
Summary
InnateDB Gene IDBG-60968.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL23A1
Gene Name collagen, type XXIII, alpha 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000050767
Encoded Proteins
collagen, type XXIII, alpha 1
collagen, type XXIII, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary COL23A1 is a member of the transmembrane collagens, a subfamily of the nonfibrillar collagens that contain a single pass hydrophobic transmembrane domain (Banyard et al., 2003 [PubMed 12644459]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 5:178237618-178590555
Strand Reverse strand
Band q35.3
Transcripts
ENST00000390654 ENSP00000375069
ENST00000407622 ENSP00000385092
ENST00000484750
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0022617 extracellular matrix disassembly
GO:0030198 extracellular matrix organization
GO:0030574 collagen catabolic process
Cellular Component
GO:0005581 collagen trimer
GO:0005788 endoplasmic reticulum lumen
GO:0005886 plasma membrane
GO:0016021 integral component of membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Not yet available
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Pathways
NETPATH
REACTOME
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Integrin cell surface interactions pathway
Collagen degradation pathway
Collagen formation pathway
KEGG
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q86Y22
TrEMBL
UniProt Splice Variant
Entrez Gene 91522
UniGene Hs.660026
RefSeq NM_173465
HUGO HGNC:22990
OMIM 610043
CCDS CCDS4436
HPRD 16733
IMGT
EMBL AL137461 AY158895 AY898961 BC042428
GenPept AAH42428 AAO18361 AAX84028 CAB70749
RNA Seq Atlas 91522