Version 5.4
Bos taurus Gene: LDB1
Summary
InnateDB Gene IDBG-639018.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LDB1
Gene Name Uncharacterized protein
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000005780
Encoded Proteins
IDBP-691146
LIM domain binding 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000198728:
Gene Information
Type Protein coding
Genomic Location Chromosome 26:22652090-22663974
Strand Reverse strand
Band
Transcripts
ENSBTAT00000007599 ENSBTAP00000007599
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 61 interaction(s) predicted by orthology.
Predicted by orthology
Total 61 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000989 transcription factor binding transcription factor activity
GO:0001102 RNA polymerase II activating transcription factor binding
GO:0001158 enhancer sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003712 transcription cofactor activity
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0030274 LIM domain binding
GO:0042803 protein homodimerization activity
GO:0043621 protein self-association
Biological Process
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0001702 gastrulation with mouth forming second
GO:0001942 hair follicle development
GO:0006366 transcription from RNA polymerase II promoter
GO:0009948 anterior/posterior axis specification
GO:0010669 epithelial structure maintenance
GO:0016055 Wnt signaling pathway
GO:0021549 cerebellum development
GO:0021702 cerebellar Purkinje cell differentiation
GO:0022607 cellular component assembly
GO:0030182 neuron differentiation
GO:0032784 regulation of DNA-templated transcription, elongation
GO:0035019 somatic stem cell maintenance
GO:0043973 histone H3-K4 acetylation
GO:0045647 negative regulation of erythrocyte differentiation
GO:0045785 positive regulation of cell adhesion
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046985 positive regulation of hemoglobin biosynthetic process
GO:0060322 head development
Cellular Component
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0043234 protein complex
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000198728
View Gene Order
ENSMUSG00000025223
View Gene Order
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL F1N4N0
UniProt Splice Variant
Entrez Gene 526472
UniGene Bt.4553
RefSeq
HUGO HGNC:6532
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02058995 DAAA02058996 DAAA02058997
GenPept
RNA Seq Atlas 526472

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca