Version 5.4
Homo sapiens Gene: SCAND1
Summary
InnateDB Gene IDBG-71948.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SCAND1
Gene Name SCAN domain containing 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000171222
Encoded Proteins
IDBP-71950
SCAN domain containing 1
IDBP-71952
SCAN domain containing 1
IDBP-812176
SCAN domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a SCAN box domain-containing protein. The SCAN domain is a highly conserved, leucine-rich motif of approximately 60 aa originally found within a subfamily of zinc finger proteins. This gene belongs to a family of genes that encode an isolated SCAN domain, but no zinc finger motif. This protein binds to and may regulate the function of the transcription factor myeloid zinc finger 1B. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Jan 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 20:35953617-35959472
Strand Reverse strand
Band q11.23
Transcripts
ENST00000373991 ENSP00000363103
ENST00000305978 ENSP00000301995
ENST00000615116 ENSP00000481289
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 22 experimentally validated interaction(s) in this database.
Experimentally validated
Total 22 [view]
Protein-Protein 21 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0003713 transcription coactivator activity
GO:0042802 identical protein binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000046229
View Gene Order
ENSBTAG00000005573
Not yet available
Cross-References
SwissProt P57086
TrEMBL H0UIA5 Q9NZG6
UniProt Splice Variant
Entrez Gene 51282
UniGene Hs.584909
RefSeq NM_033630 NM_016558
HUGO HGNC:10566
OMIM 610416
CCDS CCDS13269
HPRD 15298
IMGT
EMBL AF204271 AF207829 AL109965 BC000785 BC036709 BC041022 CH471077 CR457188
GenPept AAF59839 AAF66832 AAH00785 AAH36709 AAH41022 CAC09390 CAG33469 EAW76150 EAW76151 EAW76152
RNA Seq Atlas 51282

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca