Homo sapiens Gene: COL27A1
Summary
InnateDB Gene IDBG-82019.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL27A1
Gene Name collagen, type XXVII, alpha 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000196739
Encoded Proteins
collagen, type XXVII, alpha 1
collagen, type XXVII, alpha 1
collagen, type XXVII, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Fibrillar collagens, such as COL27A1, compose one of the most ancient families of extracellular matrix molecules. They form major structural elements in extracellular matrices of cartilage, skin, and tendon (Boot-Handford et al., 2003 [PubMed 12766169]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 9:114155560-114312511
Strand Forward strand
Band q32
Transcripts
ENST00000356083 ENSP00000348385
ENST00000451716 ENSP00000391328
ENST00000494090 ENSP00000432928
ENST00000485397
ENST00000477421
ENST00000494780
ENST00000490831
ENST00000468565
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005201 extracellular matrix structural constituent
GO:0046872 metal ion binding
Biological Process
GO:0030198 extracellular matrix organization
Cellular Component
GO:0005576 extracellular region
GO:0005581 collagen trimer
GO:0005583 fibrillar collagen trimer
GO:0005788 endoplasmic reticulum lumen
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Not yet available
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Pathways
NETPATH
REACTOME
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen formation pathway
KEGG
Focal adhesion pathway
ECM-receptor interaction pathway
Protein digestion and absorption pathway
Amoebiasis pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q8IZC6
TrEMBL Q5T1U7
UniProt Splice Variant
Entrez Gene 85301
UniGene Hs.494892 Hs.593318 Hs.604321
RefSeq NM_032888 XM_006717310
HUGO HGNC:22986
OMIM 608461
CCDS CCDS6802
HPRD
IMGT
EMBL AB058773 AL356796 AL445543 AY149237 BC080610
GenPept AAH80610 AAN41263 BAB47499 CAI14772 CAI16857
RNA Seq Atlas 85301