Mus musculus Protein: Arl13b
Summary
InnateDB Protein IDBP-170244.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Arl13b
Protein Name ADP-ribosylation factor-like 13B
Synonyms A530097K21Rik; A930014M17Rik; Arl2l1; C530009C10Rik; hnn;
Species Mus musculus
Ensembl Protein ENSMUSP00000086703
InnateDB Gene IDBG-170242 (Arl13b)
Protein Structure
UniProt Annotation
Function Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B. Binds GTP but is not able to hydrolyze it; the GTPase activity remains unclear. Required to pattern the neural tube. Involved in cerebral cortex development: required for the initial formation of a polarized radial glial scaffold, the first step in the construction of the cerebral cortex, by regulating ciliary signaling (PubMed:23817546). Regulates the migration and placement of postmitotic interneurons in the developing cerebral cortex (PubMed:23153492). {ECO:0000269PubMed:17488627, ECO:0000269PubMed:21539826, ECO:0000269PubMed:21976698, ECO:0000269PubMed:22554696, ECO:0000269PubMed:23014696, ECO:0000269PubMed:23153492, ECO:0000269PubMed:23817546}.
Subcellular Localization Cell projection, cilium membrane {ECO:0000269PubMed:17488627, ECO:0000269PubMed:20231383, ECO:0000269PubMed:21976698, ECO:0000269PubMed:23153492, ECO:0000269PubMed:23817546, ECO:0000269PubMed:24120134, ECO:0000269PubMed:24339792}; Lipid-anchor {ECO:0000269PubMed:17488627, ECO:0000269PubMed:20231383, ECO:0000269PubMed:21976698, ECO:0000269PubMed:23153492, ECO:0000269PubMed:23817546, ECO:0000269PubMed:24120134, ECO:0000269PubMed:24339792}. Note=Associates to the cilium membrane via palmitoylation. Localizes to proximal ciliary membranes, to an inversin-like subciliary membrane compartment, excluding the transition zone.
Disease Associations
Tissue Specificity Cilium-specific protein. Expressed in neuroepithelial cells and developing radial glia of the developing cerebral cortex: present in both neuroepithelial and radial progenitor cells. In radial progenitors, found in the apical, cell soma domains of these cells (at protein level). Expressed in the primary cilia of postmitotic cortical neurons during embryonic and postnatal development. {ECO:0000269PubMed:23153492, ECO:0000269PubMed:23817546}.
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0005525 GTP binding
Biological Process
GO:0001947 heart looping
GO:0006886 intracellular protein transport
GO:0007224 smoothened signaling pathway
GO:0007264 small GTPase mediated signal transduction
GO:0007368 determination of left/right symmetry
GO:0009953 dorsal/ventral pattern formation
GO:0021532 neural tube patterning
GO:0021830 interneuron migration from the subpallium to the cortex
GO:0021943 formation of radial glial scaffolds
GO:0035058 nonmotile primary cilium assembly
GO:0042384 cilium assembly
GO:0070986 left/right axis specification
Cellular Component
GO:0005622 intracellular
GO:0005929 cilium
GO:0060170 ciliary membrane
GO:0072372 primary cilium
Protein Structure and Domains
PDB ID MGI:1915396
InterPro IPR001806 Small GTPase superfamily
IPR005225 Small GTP-binding protein domain
IPR006687 Small GTPase superfamily, SAR1-type
IPR006689 Small GTPase superfamily, ARF/SAR type
IPR019009 Signal recognition particle receptor, beta subunit
IPR024156 Small GTPase superfamily, ARF type
IPR027417 P-loop containing nucleoside triphosphate hydrolase
PFAM PF00071
PF00025
PF09439
PRINTS PR00449
PR00328
PIRSF
SMART SM00178
SM00177
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q640N2
PhosphoSite PhosphoSite-Q640N2
TrEMBL Q9CUD0
UniProt Splice Variant
Entrez Gene 68146
UniGene Mm.96833
RefSeq NP_080853
MGI ID
MGI Symbol Arl13b
OMIM
CCDS CCDS28261
HPRD
IMGT
EMBL AC154309 AK016794 BC082574 CH466521
GenPept AAH82574 BAB30434 EDK98235