Version 5.4
Mus musculus Protein: Arid5a
Summary
InnateDB Protein IDBP-536926.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Arid5a
Protein Name AT rich interactive domain 5A (MRF1-like)
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000117810
InnateDB Gene IDBG-144096 (Arid5a)
Protein Structure
UniProt Annotation
Function DNA-binding protein that may regulate transcription and act as a repressor by binding to AT-rich stretches in the promoter region of target genes. {ECO:0000250}.
Subcellular Localization Nucleus {ECO:0000255PROSITE- ProRule:PRU00355}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0008134 transcription factor binding
Biological Process
GO:0002062 chondrocyte differentiation
GO:0006351 transcription, DNA-templated
GO:0035066 positive regulation of histone acetylation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005730 nucleolus
Protein Structure and Domains
PDB ID MGI:2443039
InterPro IPR001606 ARID/BRIGHT DNA-binding domain
PFAM PF01388
PRINTS
PIRSF
SMART SM00501
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q3U108
PhosphoSite PhosphoSite-Q3U108
TrEMBL
UniProt Splice Variant
Entrez Gene 214855
UniGene Mm.34316
RefSeq NP_666108
MGI ID
MGI Symbol Arid5a
OMIM
CCDS CCDS14876
HPRD
IMGT
EMBL AK041344 AK085015 AK149839 AK150170 AK156376 AK156622 AK156934 AK157607 BC027152
GenPept AAH27152 BAC30913 BAC39338 BAE29115 BAE29358 BAE33692 BAE33779 BAE33904 BAE34133

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca