Version 5.4
Mus musculus Gene: Arid5a
Summary
InnateDB Gene IDBG-144096.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Arid5a
Gene Name AT rich interactive domain 5A (MRF1-like)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000037447
Encoded Proteins
IDBP-144102
AT rich interactive domain 5A (MRF1-like)
IDBP-250515
AT rich interactive domain 5A (MRF1-like)
IDBP-250517
AT rich interactive domain 5A (MRF1-like)
IDBP-250521
AT rich interactive domain 5A (MRF1-like)
IDBP-713917
IDBP-531554
AT rich interactive domain 5A (MRF1-like)
IDBP-536926
AT rich interactive domain 5A (MRF1-like)
IDBP-533912
AT rich interactive domain 5A (MRF1-like)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000196843:
Members of the ARID protein family, including ARID5A, have diverse functions but all appear to play important roles in development, tissue-specific gene expression, and regulation of cell growth (Patsialou et al., 2005 [PubMed 15640446]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 1:36307733-36324029
Strand Forward strand
Band B
Transcripts
ENSMUST00000097778 ENSMUSP00000095385
ENSMUST00000115032 ENSMUSP00000110684
ENSMUST00000115031 ENSMUSP00000110683
ENSMUST00000115029 ENSMUSP00000110681
ENSMUST00000116629 ENSMUSP00000136037
ENSMUST00000126413 ENSMUSP00000115490
ENSMUST00000137906 ENSMUSP00000117810
ENSMUST00000124280
ENSMUST00000145179
ENSMUST00000150747
ENSMUST00000142319 ENSMUSP00000119953
ENSMUST00000140218
ENSMUST00000147123
ENSMUST00000141121
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
Biological Process
GO:0002062 chondrocyte differentiation
GO:0006351 transcription, DNA-templated
GO:0035066 positive regulation of histone acetylation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005730 nucleolus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000196843
View Gene Order
ENSBTAG00000014090
Not yet available
Cross-References
SwissProt Q3U108
TrEMBL D3Z085 D3Z0W0 D3Z7U1 J3KMU9
UniProt Splice Variant
Entrez Gene 214855
UniGene Mm.34316
RefSeq NM_001172205 NM_001172206 NM_001290726 NM_001290727 NM_145996 XM_006495849 XM_006495850 XM_006495851 XM_006495852
OMIM
CCDS CCDS14876 CCDS48239 CCDS69878
HPRD
IMGT
MGI ID MGI:2443039
MGI Symbol Arid5a
EMBL AC132456 AK041344 AK085015 AK149839 AK150170 AK156376 AK156622 AK156934 AK157607 BC027152
GenPept AAH27152 BAC30913 BAC39338 BAE29115 BAE29358 BAE33692 BAE33779 BAE33904 BAE34133
RNA Seq Atlas 214855

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca