InnateDB: Systems Biology of the Innate Immune Response

Bos taurus Protein: YBX1

Summary

InnateDB Protein

IDBP-692835.2

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

YBX1

Protein Name

nuclease-sensitive element-binding protein 1

Synonyms

NSEP1; YB1;

Species

Bos taurus

Ensembl Protein

ENSBTAP00000023094

InnateDB Gene

IDBG-640558 (YBX1)

Protein Structure

UniProt Annotation

Function

Subcellular Localization

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 156 interaction(s) predicted by orthology.

Predicted by orthology
Total	156 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0003697	single-stranded DNA binding
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0001701	in utero embryonic development
GO:0006355	regulation of transcription, DNA-templated
GO:0051154	negative regulation of striated muscle cell differentiation
GO:0070934	CRD-mediated mRNA stabilization

Cellular Component

GO:0005634	nucleus
GO:0005689	U12-type spliceosomal complex
GO:0005737	cytoplasm
GO:0010494	cytoplasmic stress granule
GO:0030529	ribonucleoprotein complex
GO:0031965	nuclear membrane
GO:0043231	intracellular membrane-bounded organelle
GO:0070062	extracellular vesicular exosome
GO:0070937	CRD-mediated mRNA stability complex
GO:0071204	histone pre-mRNA 3'end processing complex

Protein Structure and Domains

PDB ID

InterPro

IPR002059 Cold-shock protein, DNA-binding
IPR011129 Cold shock protein
IPR012340 Nucleic acid-binding, OB-fold

PFAM

PF00313

PRINTS

PR00050

PIRSF

SMART

SM00357

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

PhosphoSite

PhosphoSite-

TrEMBL

F1MZ92

UniProt Splice Variant

Entrez Gene

287023

UniGene

Bt.5332

RefSeq

NP_777240

HUGO

OMIM

CCDS

HPRD

IMGT

EMBL

DAAA02009073 DAAA02009074 DAAA02009075

GenPept