Version 5.4
Homo sapiens Gene: SYCP1
Summary
InnateDB Gene IDBG-101328.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SYCP1
Gene Name synaptonemal complex protein 1
Synonyms CT8; HOM-TES-14; SCP-1; SCP1
Species Homo sapiens
Ensembl Gene ENSG00000198765
Encoded Proteins
IDBP-101330
synaptonemal complex protein 1
IDBP-101334
synaptonemal complex protein 1
IDBP-387867
synaptonemal complex protein 1
IDBP-807047
synaptonemal complex protein 1
IDBP-807049
synaptonemal complex protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 1:114854803-114995370
Strand Forward strand
Band p13.2
Transcripts
ENST00000369522 ENSP00000358535
ENST00000369518 ENSP00000358531
ENST00000455987 ENSP00000410011
ENST00000477215
ENST00000468191
ENST00000482717
ENST00000493377
ENST00000477590
ENST00000613524 ENSP00000482532
ENST00000618516 ENSP00000480997
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
Biological Process
GO:0000711 meiotic DNA repair synthesis
GO:0007130 synaptonemal complex assembly
GO:0007131 reciprocal meiotic recombination
GO:0007283 spermatogenesis
GO:0032880 regulation of protein localization
GO:0035092 sperm chromatin condensation
GO:0051026 chiasma assembly
GO:0051878 lateral element assembly
Cellular Component
GO:0000795 synaptonemal complex
GO:0000801 central element
GO:0000802 transverse filament
GO:0001673 male germ cell nucleus
GO:0005694 chromosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000027855
View Gene Order
ENSBTAG00000032071
Not yet available
Pathways
NETPATH
REACTOME
REACT_75792
Meiotic synapsis pathway
REACT_115566
Cell Cycle pathway
REACT_111183
Meiosis pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL A0A024R0I2 Q5VXJ5
UniProt Splice Variant
Entrez Gene 6847
UniGene
RefSeq NM_001282541 NM_001282542 NM_003176 XM_005271154 XM_006710859
HUGO HGNC:11487
OMIM 602162
CCDS CCDS879 CCDS72840
HPRD
IMGT
EMBL AL358372 AL645502 BC126266 CH471122 D67035 X95654
GenPept AAI26267 BAA22586 CAA64956 CAH70064 CAH72847 EAW56622 EAW56623
RNA Seq Atlas 6847

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca