Version 5.4
Mus musculus Gene: Sycp1
Summary
InnateDB Gene IDBG-180491.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sycp1
Gene Name synaptonemal complex protein 1
Synonyms SCP1
Species Mus musculus
Ensembl Gene ENSMUSG00000027855
Encoded Proteins
IDBP-180493
synaptonemal complex protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000198765:
Gene Information
Type Protein coding
Genomic Location Chromosome 3:102818499-102936100
Strand Reverse strand
Band F2.2
Transcripts
ENSMUST00000029448 ENSMUSP00000029448
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
Biological Process
GO:0000711 meiotic DNA repair synthesis
GO:0007130 synaptonemal complex assembly
GO:0007283 spermatogenesis
GO:0032880 regulation of protein localization
GO:0035092 sperm chromatin condensation
GO:0051026 chiasma assembly
GO:0051878 lateral element assembly
Cellular Component
GO:0000795 synaptonemal complex
GO:0000800 lateral element
GO:0000801 central element
GO:0000802 transverse filament
GO:0001673 male germ cell nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000198765
View Gene Order
ENSBTAG00000032071
Not yet available
Pathways
NETPATH
REACTOME
REACT_75800
Meiotic Synapsis pathway
REACT_200794
Mus musculus biological processes pathway
REACT_198626
Meiotic synapsis pathway
REACT_188804
Cell Cycle pathway
REACT_198624
Meiosis pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_75792
Meiotic synapsis pathway
REACT_115566
Cell Cycle pathway
REACT_111183
Meiosis pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q62209
TrEMBL
UniProt Splice Variant
Entrez Gene 20957
UniGene Mm.243849
RefSeq NM_011516 XM_006501227 XM_006501229 XM_006501230
OMIM
CCDS CCDS38567
HPRD
IMGT
MGI ID MGI:105931
MGI Symbol Sycp1
EMBL AC122219 AC134871 AH006782 BC137967 D88539 L41069 Z38118
GenPept AAA64514 AAC53335 AAI37968 BAA13639 CAA86262
RNA Seq Atlas 20957

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca