Version 5.4
Homo sapiens Gene: EPDR1
Summary
InnateDB Gene IDBG-12858.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol EPDR1
Gene Name ependymin related protein 1 (zebrafish)
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000086289
Encoded Proteins
IDBP-12860
ependymin related protein 1 (zebrafish)
IDBP-372453
ependymin related protein 1 (zebrafish)
IDBP-372455
ependymin related protein 1 (zebrafish)
IDBP-479019
ependymin related protein 1 (zebrafish)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene is a type II transmembrane protein that is similar to two families of cell adhesion molecules, the protocadherins and ependymins. This protein may play a role in calcium-dependent cell adhesion. This protein is glycosylated, and the orthologous mouse protein is localized to the lysosome. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 8. [provided by RefSeq, Aug 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 7:37683843-37951941
Strand Forward strand
Band p14.1
Transcripts
ENST00000199448 ENSP00000199448
ENST00000423717 ENSP00000409211
ENST00000425345 ENSP00000413359
ENST00000476620 ENSP00000425858
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
Biological Process
GO:0007160 cell-matrix adhesion
Cellular Component
GO:0005576 extracellular region
GO:0005764 lysosome
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000002808
View Gene Order
ENSBTAG00000033197
Not yet available
Cross-References
SwissProt Q9UM22
TrEMBL
UniProt Splice Variant
Entrez Gene 54749
UniGene Hs.563491 Hs.729190
RefSeq NM_001242946 NM_001242948 NM_017549
HUGO HGNC:17572
OMIM
CCDS CCDS59051 CCDS5454 CCDS59052
HPRD 16865
IMGT
EMBL AC018634 AC083860 AC083865 AF361252 AJ250475 AK290885 AK309180 AY027861 BC000686 BC018299 CH471073 DQ914439
GenPept AAH00686 AAH18299 AAK15787 AAK26441 ABI84106 BAF83574 CAB60269 EAW94086
RNA Seq Atlas 54749

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca