Version 5.4
Mus musculus Gene: Pax9
Summary
InnateDB Gene IDBG-141254.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pax9
Gene Name paired box gene 9
Synonyms Pax-9
Species Mus musculus
Ensembl Gene ENSMUSG00000001497
Encoded Proteins
IDBP-141256
paired box gene 9
IDBP-534638
paired box gene 9
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000198807:
This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and cancer growth. The specific function of the paired box 9 gene is unknown but it may involve development of stratified squamous epithelia as well as various organs and skeletal elements. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 12:56691767-56712822
Strand Forward strand
Band C1
Transcripts
ENSMUST00000001538 ENSMUSP00000001538
ENSMUST00000153250 ENSMUSP00000117928
ENSMUST00000152848
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 8 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 8 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007492 endoderm development
GO:0009887 organ morphogenesis
GO:0042476 odontogenesis
GO:0042481 regulation of odontogenesis
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0060325 face morphogenesis
GO:0071363 cellular response to growth factor stimulus
Cellular Component
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005739 mitochondrion
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000198807
View Gene Order
ENSBTAG00000009186
Not yet available
Cross-References
SwissProt P47242
TrEMBL Q3V1K1
UniProt Splice Variant
Entrez Gene 18511
UniGene Mm.5035
RefSeq NM_011041 XM_006515579 XM_006515580 XM_006515581
OMIM
CCDS CCDS25924
HPRD
IMGT
MGI ID MGI:97493
MGI Symbol Pax9
EMBL AK132404 BC005794 X73037 X84000
GenPept AAH05794 BAE21149 CAA51518 CAA58824
RNA Seq Atlas 18511

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca