Version 5.4
Mus musculus Gene: Cdkal1
Summary
InnateDB Gene IDBG-141263.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Cdkal1
Gene Name CDK5 regulatory subunit associated protein 1-like 1
Synonyms 1190005B03Rik; 6620401C13Rik
Species Mus musculus
Ensembl Gene ENSMUSG00000006191
Encoded Proteins
IDBP-141265
CDK5 regulatory subunit associated protein 1-like 1
IDBP-141269
CDK5 regulatory subunit associated protein 1-like 1
IDBP-260513
CDK5 regulatory subunit associated protein 1-like 1
IDBP-539889
CDK5 regulatory subunit associated protein 1-like 1
IDBP-540642
CDK5 regulatory subunit associated protein 1-like 1
IDBP-534343
CDK5 regulatory subunit associated protein 1-like 1
IDBP-540482
CDK5 regulatory subunit associated protein 1-like 1
IDBP-535046
CDK5 regulatory subunit associated protein 1-like 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000145996:
The protein encoded by this gene is a member of the methylthiotransferase family. The function of this gene is not known. Genome-wide association studies have linked single nucleotide polymorphisms in an intron of this gene with susceptibilty to type 2 diabetes. [provided by RefSeq, May 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:29191746-29855674
Strand Reverse strand
Band A3.2
Transcripts
ENSMUST00000006353 ENSMUSP00000006353
ENSMUST00000091674 ENSMUSP00000089262
ENSMUST00000110323 ENSMUSP00000105952
ENSMUST00000140278 ENSMUSP00000122249
ENSMUST00000154209 ENSMUSP00000121792
ENSMUST00000131792
ENSMUST00000153086
ENSMUST00000137225 ENSMUSP00000117404
ENSMUST00000123641
ENSMUST00000124532 ENSMUSP00000118815
ENSMUST00000129231 ENSMUSP00000120432
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 0
Protein-DNA 0
Protein-RNA 1 [view]
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003824 catalytic activity
GO:0016740 transferase activity
GO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0009451 RNA modification
GO:0035600 tRNA methylthiolation
GO:0043412 macromolecule modification
GO:1990145 maintenance of translational fidelity
Cellular Component
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005791 rough endoplasmic reticulum
GO:0016020 membrane
GO:0016021 integral component of membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000145996
View Gene Order
ENSBTAG00000025589
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.212227 Mm.422301 Mm.464293
RefSeq NM_144536 XM_006516763
OMIM
CCDS CCDS26412
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca