Version 5.4
| Homo sapiens Gene: COL13A1 | |||||||||||||||||
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| Summary | |||||||||||||||||
| InnateDB Gene | IDBG-77110.6 | ||||||||||||||||
| Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||
| Gene Symbol | COL13A1 | ||||||||||||||||
| Gene Name | collagen, type XIII, alpha 1 | ||||||||||||||||
| Synonyms | COLXIIIA1 | ||||||||||||||||
| Species | Homo sapiens | ||||||||||||||||
| Ensembl Gene | ENSG00000197467 | ||||||||||||||||
| Encoded Proteins |
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
collagen, type XIII, alpha 1
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| Protein Structure | |||||||||||||||||
| Useful resources | Stemformatics EHFPI ImmGen | ||||||||||||||||
| Entrez Gene | |||||||||||||||||
| Summary |
This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined. [provided by RefSeq, Jul 2008] |
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| Gene Information | |||||||||||||||||
| Type | Protein coding | ||||||||||||||||
| Genomic Location | Chromosome 10:69801931-69964275 | ||||||||||||||||
| Strand | Forward strand | ||||||||||||||||
| Band | q22.1 | ||||||||||||||||
| Transcripts | |||||||||||||||||
| Interactions | |||||||||||||||||
| Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
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| Gene Ontology | |||||||||||||||||
Molecular Function |
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| Biological Process |
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| Cellular Component |
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| Orthologs | |||||||||||||||||
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Species
Mus musculus
Bos taurus
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Gene ID
Gene Order
Not yet available
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| Pathways | |||||||||||||||||
| NETPATH | |||||||||||||||||
| REACTOME |
Integrin cell surface interactions pathway
Collagen biosynthesis and modifying enzymes pathway
Collagen degradation pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Collagen formation pathway
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| KEGG |
Protein digestion and absorption pathway
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| INOH | |||||||||||||||||
| PID NCI | |||||||||||||||||
| Cross-References | |||||||||||||||||
| SwissProt | |||||||||||||||||
| TrEMBL | E7EX21 Q9UP45 | ||||||||||||||||
| UniProt Splice Variant | |||||||||||||||||
| Entrez Gene | 1305 | ||||||||||||||||
| UniGene | Hs.211933 Hs.679665 Hs.695934 | ||||||||||||||||
| RefSeq | NM_001130103 NM_080798 NM_080800 NM_080801 NM_080802 NM_080805 | ||||||||||||||||
| HUGO | HGNC:2190 | ||||||||||||||||
| OMIM | 120350 | ||||||||||||||||
| CCDS | CCDS44419 CCDS44423 CCDS44424 CCDS44425 CCDS44427 CCDS44428 | ||||||||||||||||
| HPRD | 00383 | ||||||||||||||||
| IMGT | |||||||||||||||||
| EMBL | AC024601 AC025426 AF071009 AL138925 | ||||||||||||||||
| GenPept | AAD48082 | ||||||||||||||||
| RNA Seq Atlas | 1305 | ||||||||||||||||