Version 5.4
Mus musculus Gene: Tdrd1
Summary
InnateDB Gene IDBG-179230.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Tdrd1
Gene Name tudor domain containing 1
Synonyms MTR-1
Species Mus musculus
Ensembl Gene ENSMUSG00000025081
Encoded Proteins
IDBP-179232
tudor domain containing 1
IDBP-257768
tudor domain containing 1
IDBP-257770
tudor domain containing 1
IDBP-400819
tudor domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000095627:
This gene is similar to a mouse gene that encodes a tudor domain protein. Alternatively spliced transcript variants have been described but their full length sequences have not been determined. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 19:56826209-56870012
Strand Forward strand
Band D2
Transcripts
ENSMUST00000078723 ENSMUSP00000077785
ENSMUST00000111606 ENSMUSP00000107233
ENSMUST00000111604 ENSMUSP00000107231
ENSMUST00000121249 ENSMUSP00000112786
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0046872 metal ion binding
Biological Process
GO:0007126 meiotic nuclear division
GO:0007275 multicellular organismal development
GO:0007281 germ cell development
GO:0007283 spermatogenesis
GO:0031047 gene silencing by RNA
GO:0034587 piRNA metabolic process
GO:0043046 DNA methylation involved in gamete generation
Cellular Component
GO:0005737 cytoplasm
GO:0030529 ribonucleoprotein complex
GO:0033391 chromatoid body
GO:0043186 P granule
GO:0071546 pi-body
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000095627
View Gene Order
ENSBTAG00000006855
Not yet available
Cross-References
SwissProt Q99MV1
TrEMBL
UniProt Splice Variant
Entrez Gene 83561
UniGene Mm.247541
RefSeq NM_001002240 XM_006527475 XM_006527476 XM_006527479 NM_001002238 NM_001002241 NM_031387 XM_006527473 XM_006527474 XM_006527477
OMIM
CCDS CCDS29922
HPRD
IMGT
MGI ID MGI:1933218
MGI Symbol Tdrd1
EMBL AB067571 AB183526 AB183527 AB183528 AB183529 AF285591 AK029806 BC129954 BC129955
GenPept AAI29955 AAI29956 AAK31970 BAC02433 BAC26625 BAD27575 BAD27576 BAD27577 BAD27578
RNA Seq Atlas 83561

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca