InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Trim23

Summary

InnateDB Gene

IDBG-179734.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Trim23

Gene Name

tripartite motif-containing 23

Synonyms

6330516O20Rik; AI450195; Arfd1

Species

Mus musculus

Ensembl Gene

ENSMUSG00000021712

Encoded Proteins

IDBP-179736

tripartite motif-containing 23

IDBP-179738

tripartite motif-containing 23

IDBP-179740

tripartite motif-containing 23

IDBP-533728

tripartite motif-containing 23

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

InnateDB Annotation from Orthologs

Summary

PMID 20724660

[Homo sapiens] TRIM23 mediates K(lys)-27-ubiquitin conjugation to IKBKG (NEMO) which is essential for TLR3- and RIG-I/MDA5-mediated antiviral innate and inflammatory responses.

PMID 23438823

[Homo sapiens] TRIM23 was identified in a systematic screen for positive regulators of innate immune responses.

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000113595:
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This protein is also a member of the ADP ribosylation factor family of guanine nucleotide-binding family of proteins. Its carboxy terminus contains an ADP-ribosylation factor domain and a guanine nucleotide binding site, while the amino terminus contains a GTPase activating protein domain which acts on the guanine nucleotide binding site. The protein localizes to lysosomes and the Golgi apparatus. It plays a role in the formation of intracellular transport vesicles, their movement from one compartment to another, and phopholipase D activation. Three alternatively spliced transcript variants for this gene have been described. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 13:104178797-104203372

Strand

Forward strand

Band

Transcripts

ENSMUST00000022225	ENSMUSP00000022225
ENSMUST00000069187	ENSMUSP00000070767
ENSMUST00000069174	ENSMUSP00000069371
ENSMUST00000160230	ENSMUSP00000124425

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 53 interaction(s) predicted by orthology.

Predicted by orthology
Total	53 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003924	GTPase activity
GO:0004842	ubiquitin-protein transferase activity
GO:0004871	signal transducer activity
GO:0005515	protein binding
GO:0005525	GTP binding
GO:0008270	zinc ion binding
GO:0016874	ligase activity
GO:0019001	guanyl nucleotide binding
GO:0019003	GDP binding
GO:0031683	G-protein beta/gamma-subunit complex binding
GO:0042802	identical protein binding
GO:0046872	metal ion binding

Biological Process

GO:0006184	GTP catabolic process
GO:0006886	intracellular protein transport
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007264	small GTPase mediated signal transduction
GO:0015031	protein transport
GO:0016567	protein ubiquitination

Cellular Component

GO:0000139	Golgi membrane
GO:0005622	intracellular
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005765	lysosomal membrane
GO:0070062	extracellular vesicular exosome

Orthologs

Species

Homo sapiens

Bos taurus

Gene ID

Gene Order

ENSG00000113595

View Gene Order

ENSBTAG00000009519

Not yet available

Cross-References

SwissProt

Q8BGX0

TrEMBL

E0CY80

UniProt Splice Variant

Entrez Gene

81003

UniGene

Mm.244190 Mm.395144

RefSeq

NM_030731 XM_006517794

OMIM

CCDS

CCDS26747

HPRD

IMGT

MGI ID

MGI:1933161

MGI Symbol

Trim23

EMBL

AC154216 AK030843 AK030862 AK039280 AK042070 AK088922 BC056390 BC059017

GenPept

AAH56390 AAH59017 BAC27156 BAC27160 BAC30304 BAC31152 BAC40654

RNA Seq Atlas

81003