Version 5.4
Mus musculus Gene: Sync
Summary
InnateDB Gene IDBG-190748.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sync
Gene Name syncoilin
Synonyms 1110057H03Rik; SNIP4
Species Mus musculus
Ensembl Gene ENSMUSG00000001333
Encoded Proteins
IDBP-190750
syncoilin
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000162520:
This gene encodes a member of the intermediate filament family which contains an N-terminal head domain, followed by a central coiled-coil region and a short C-terminal tail. The protein is highly expressed in skeletal and cardiac muscle. The protein links the dystrophin associated protein complex (DAPC) to desmin filaments in muscle and may have a structural role in striated muscle. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:129287617-129308559
Strand Forward strand
Band D2.2
Transcripts
ENSMUST00000102599 ENSMUSP00000099659
ENSMUST00000146448
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005198 structural molecule activity
GO:0005515 protein binding
Biological Process
GO:0045103 intermediate filament-based process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0030018 Z disc
GO:0031594 neuromuscular junction
GO:0042383 sarcolemma
GO:0048471 perinuclear region of cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000162520
View Gene Order
ENSBTAG00000026684
Not yet available
Cross-References
SwissProt Q9EPM5
TrEMBL C0LQ89
UniProt Splice Variant
Entrez Gene 68828
UniGene Mm.132243
RefSeq NM_023485
OMIM
CCDS CCDS18687
HPRD
IMGT
MGI ID MGI:1916078
MGI Symbol Sync
EMBL AJ251641 AK004279 AK081983 AK160756 AK166916 AL607123 BC106855 CH466552 FJ752164
GenPept AAI06856 ACN22026 BAB23246 BAC38387 BAE35992 BAE39114 CAC17787 CAM22957 EDL30205
RNA Seq Atlas 68828

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca