Version 5.4
Mus musculus Gene: Col16a1
Summary
InnateDB Gene IDBG-191869.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Col16a1
Gene Name collagen, type XVI, alpha 1
Synonyms 2700007F12Rik; A530052M23Rik; AI838662; CA1F
Species Mus musculus
Ensembl Gene ENSMUSG00000040690
Encoded Proteins
IDBP-191871
collagen, type XVI, alpha 1
IDBP-539857
collagen, type XVI, alpha 1
IDBP-532663
collagen, type XVI, alpha 1
IDBP-532279
collagen, type XVI, alpha 1
IDBP-537517
collagen, type XVI, alpha 1
IDBP-535088
collagen, type XVI, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000084636:
This gene encodes the alpha chain of type XVI collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. High levels of type XVI collagen have been found in fibroblasts and keratinocytes, and in smooth muscle and amnion. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:130047840-130099283
Strand Forward strand
Band D2.2
Transcripts
ENSMUST00000044565 ENSMUSP00000035802
ENSMUST00000097867
ENSMUST00000106001
ENSMUST00000132251 ENSMUSP00000121209
ENSMUST00000142293 ENSMUSP00000119219
ENSMUST00000143432 ENSMUSP00000120384
ENSMUST00000123617 ENSMUSP00000121415
ENSMUST00000154441
ENSMUST00000143577 ENSMUSP00000120339
ENSMUST00000146606
ENSMUST00000151541
ENSMUST00000129937
ENSMUST00000135675
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005178 integrin binding
GO:0005515 protein binding
Biological Process
GO:0007155 cell adhesion
GO:0071230 cellular response to amino acid stimulus
Cellular Component
GO:0005578 proteinaceous extracellular matrix
GO:0005581 collagen trimer
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000084636
View Gene Order
ENSBTAG00000010050
Not yet available
Pathways
NETPATH
REACTOME
REACT_199045
Collagen formation pathway
REACT_198984
Collagen biosynthesis and modifying enzymes pathway
REACT_206066
Extracellular matrix organization pathway
REACT_216309
Integrin cell surface interactions pathway
REACT_199052
Degradation of the extracellular matrix pathway
REACT_199055
Collagen degradation pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_13552
Integrin cell surface interactions pathway
REACT_121139
Collagen biosynthesis and modifying enzymes pathway
REACT_150401
Collagen degradation pathway
REACT_118779
Extracellular matrix organization pathway
REACT_118572
Degradation of the extracellular matrix pathway
REACT_120729
Collagen formation pathway
KEGG
INOH
INOH website
Integrin signaling pathway pathway
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.41860
RefSeq NM_028266 XM_006502639 XM_006502640 XM_006502641 XM_006502642 XM_006502645 XM_006502646 XM_006502647 XM_006502648 XM_006536938 XM_006536939 XM_006536940 XM_006536943 XM_006536944 XM_006536945 XM_006536946 XM_006536947
OMIM
CCDS CCDS38889
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca