InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Srsf9

Summary

InnateDB Gene

IDBG-193660.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Srsf9

Gene Name

serine/arginine-rich splicing factor 9

Synonyms

25kDa; 2610029M16Rik; Sfrs9; SRp30c

Species

Mus musculus

Ensembl Gene

ENSMUSG00000029538

Encoded Proteins

IDBP-193662

serine/arginine-rich splicing factor 9

IDBP-534988

serine/arginine-rich splicing factor 9

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Two transcript variants, one protein-coding and the other not protein-coding, have been found for this gene. [provided by RefSeq, Sep 2010]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 5:115327177-115333080

Strand

Forward strand

Band

Transcripts

ENSMUST00000031513	ENSMUSP00000031513
ENSMUST00000144000
ENSMUST00000142318
ENSMUST00000149510	ENSMUSP00000121845

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 49 interaction(s) predicted by orthology.

Experimentally validated
Total	1 [view]
Protein-Protein	1 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	49 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0044822	poly(A) RNA binding