Version 5.4
Mus musculus Gene: Srrm1
Summary
InnateDB Gene IDBG-196857.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Srrm1
Gene Name serine/arginine repetitive matrix 1
Synonyms AA407769; POP101; Srm160
Species Mus musculus
Ensembl Gene ENSMUSG00000028809
Encoded Proteins
IDBP-196859
serine/arginine repetitive matrix 1
IDBP-196861
serine/arginine repetitive matrix 1
IDBP-269973
serine/arginine repetitive matrix 1
IDBP-537931
serine/arginine repetitive matrix 1
IDBP-534356
serine/arginine repetitive matrix 1
IDBP-542326
serine/arginine repetitive matrix 1
IDBP-537348
serine/arginine repetitive matrix 1
IDBP-536367
serine/arginine repetitive matrix 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000133226:
Gene Information
Type Protein coding
Genomic Location Chromosome 4:135320484-135353321
Strand Reverse strand
Band D3
Transcripts
ENSMUST00000084846 ENSMUSP00000081906
ENSMUST00000030613 ENSMUSP00000030613
ENSMUST00000105861 ENSMUSP00000101487
ENSMUST00000136342 ENSMUSP00000125003
ENSMUST00000140050 ENSMUSP00000120952
ENSMUST00000150619
ENSMUST00000136570
ENSMUST00000162914
ENSMUST00000151251
ENSMUST00000131301 ENSMUSP00000125477
ENSMUST00000154788
ENSMUST00000131373 ENSMUSP00000122754
ENSMUST00000134854
ENSMUST00000136409 ENSMUSP00000124450
ENSMUST00000134019
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 14 experimentally validated interaction(s) in this database.
They are also associated with 116 interaction(s) predicted by orthology.
Experimentally validated
Total 14 [view]
Protein-Protein 14 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 116 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000375 RNA splicing, via transesterification reactions
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0016363 nuclear matrix
GO:0016607 nuclear speck
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000133226
View Gene Order
ENSBTAG00000013772
Not yet available
Pathways
NETPATH
REACTOME
REACT_240247
mRNA 3'-end processing pathway
REACT_237682
Transport of Mature Transcript to Cytoplasm pathway
REACT_249110
mRNA Splicing pathway
REACT_257346
RNA Polymerase II Transcription Termination pathway
REACT_253727
Cleavage of Growing Transcript in the Termination Region pathway
REACT_233572
Gene Expression pathway
REACT_260226
mRNA Splicing - Major Pathway pathway
REACT_232353
Transport of Mature mRNA derived from an Intron-Containing Transcript pathway
REACT_233950
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_242255
RNA Polymerase II Transcription pathway
KEGG
mmu03013
RNA transport pathway
mmu03015
mRNA surveillance pathway pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_1849
mRNA 3'-end processing pathway
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_1597
Transport of Mature mRNA derived from an Intron-Containing Transcript pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_387
Cleavage of Growing Transcript in the Termination Region pathway
REACT_894
RNA Polymerase II Transcription Termination pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_1281
Transport of Mature Transcript to Cytoplasm pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
KEGG
hsa03013
RNA transport pathway
hsa03015
mRNA surveillance pathway pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.1963 Mm.427542 Mm.471009
RefSeq NM_001130477 NM_016799 XM_006539026 XM_006539027 XM_006539028 XM_006539029 XM_006539032 XM_006539033 XM_006539034
OMIM
CCDS CCDS38919 CCDS51329
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca