Version 5.4
Homo sapiens Gene: SRRM1
Summary
InnateDB Gene IDBG-94238.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SRRM1
Gene Name serine/arginine repetitive matrix 1
Synonyms 160-KD; POP101; SRM160
Species Homo sapiens
Ensembl Gene ENSG00000133226
Encoded Proteins
IDBP-94240
serine/arginine repetitive matrix 1
IDBP-94242
serine/arginine repetitive matrix 1
IDBP-375534
serine/arginine repetitive matrix 1
IDBP-722605
IDBP-721880
IDBP-721640
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 1:24631716-24673267
Strand Forward strand
Band p36.11
Transcripts
ENST00000374389 ENSP00000363510
ENST00000323848 ENSP00000326261
ENST00000447431 ENSP00000391430
ENST00000471693
ENST00000478890
ENST00000466910
ENST00000468822
ENST00000462710
ENST00000490543
ENST00000479034
ENST00000494934
ENST00000495561
ENST00000485441
ENST00000470243
ENST00000496882
ENST00000461768
ENST00000485541
ENST00000488317
ENST00000489130
ENST00000474843
ENST00000596378 ENSP00000471084
ENST00000593639 ENSP00000469151
ENST00000600523 ENSP00000471819
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 142 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 142 [view]
Protein-Protein 142 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000375 RNA splicing, via transesterification reactions
GO:0000398 mRNA splicing, via spliceosome
GO:0006366 transcription from RNA polymerase II promoter
GO:0006369 termination of RNA polymerase II transcription
GO:0006397 mRNA processing
GO:0006406 mRNA export from nucleus
GO:0008380 RNA splicing
GO:0010467 gene expression
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0016363 nuclear matrix
GO:0016607 nuclear speck
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000028809
View Gene Order
ENSBTAG00000013772
Not yet available
Pathways
NETPATH
REACTOME
REACT_1849
mRNA 3'-end processing pathway
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_1597
Transport of Mature mRNA derived from an Intron-Containing Transcript pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_387
Cleavage of Growing Transcript in the Termination Region pathway
REACT_894
RNA Polymerase II Transcription Termination pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_1281
Transport of Mature Transcript to Cytoplasm pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
KEGG
hsa03013
RNA transport pathway
hsa03015
mRNA surveillance pathway pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.18192 Hs.708034 Hs.730249
RefSeq NM_005839 XM_005245717 XM_005245718 XM_005245719 XM_005245720 XM_005245721
HUGO
OMIM
CCDS CCDS255
HPRD 10441
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca