Version 5.4
Mus musculus Gene: Vps53
Summary
InnateDB Gene IDBG-200697.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vps53
Gene Name vacuolar protein sorting 53 (yeast)
Synonyms 2010002A08Rik; 2310040I21Rik; 3100002B05Rik; Hccs1
Species Mus musculus
Ensembl Gene ENSMUSG00000017288
Encoded Proteins
IDBP-200699
vacuolar protein sorting 53 (yeast)
IDBP-200701
vacuolar protein sorting 53 (yeast)
IDBP-264577
vacuolar protein sorting 53 (yeast)
IDBP-628155
vacuolar protein sorting 53 (yeast)
IDBP-628149
vacuolar protein sorting 53 (yeast)
IDBP-628150
vacuolar protein sorting 53 (yeast)
IDBP-628151
vacuolar protein sorting 53 (yeast)
IDBP-628152
vacuolar protein sorting 53 (yeast)
IDBP-628153
vacuolar protein sorting 53 (yeast)
IDBP-628154
vacuolar protein sorting 53 (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000141252:
This gene encodes a protein with sequence similarity to the yeast Vps53p protein. Vps53p is involved in retrograde vesicle trafficking in late Golgi. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:76046226-76179647
Strand Reverse strand
Band B5
Transcripts
ENSMUST00000056601 ENSMUSP00000061317
ENSMUST00000094015 ENSMUSP00000091554
ENSMUST00000108419 ENSMUSP00000104057
ENSMUST00000143163
ENSMUST00000141773
ENSMUST00000143459
ENSMUST00000140886
ENSMUST00000129256 ENSMUSP00000126125
ENSMUST00000167114 ENSMUSP00000131663
ENSMUST00000166752 ENSMUSP00000129159
ENSMUST00000169734 ENSMUSP00000130499
ENSMUST00000163878 ENSMUSP00000128856
ENSMUST00000166436 ENSMUSP00000131387
ENSMUST00000170143
ENSMUST00000166084
ENSMUST00000170730 ENSMUSP00000127364
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
Cellular Component
GO:0000938 GARP complex
GO:0010008 endosome membrane
GO:0016020 membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000141252
View Gene Order
ENSBTAG00000018126
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.46397
RefSeq NM_026664 XM_006534052 XM_006534053
OMIM
CCDS CCDS25060
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca