Version 5.4
Mus musculus Gene: Sdf4
Summary
InnateDB Gene IDBG-208219.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sdf4
Gene Name stromal cell derived factor 4
Synonyms Cab45
Species Mus musculus
Ensembl Gene ENSMUSG00000029076
Encoded Proteins
IDBP-208221
stromal cell derived factor 4
IDBP-208223
stromal cell derived factor 4
IDBP-270572
stromal cell derived factor 4
IDBP-270574
stromal cell derived factor 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000078808:
This gene encodes a stromal cell derived factor that is a member of the CREC protein family. The encoded protein contains six EF-hand motifs and calcium-binding motifs. This protein localizes to the Golgi lumen and may be involved in regulating calcium dependent cellular activities. [provided by RefSeq, Sep 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:155992872-156013610
Strand Forward strand
Band E2
Transcripts
ENSMUST00000050078 ENSMUSP00000053175
ENSMUST00000097734 ENSMUSP00000095340
ENSMUST00000105579 ENSMUSP00000101204
ENSMUST00000105578 ENSMUSP00000101203
ENSMUST00000124872
ENSMUST00000149971
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 1 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 16 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0009650 UV protection
GO:0017156 calcium ion-dependent exocytosis
GO:0021549 cerebellum development
GO:0045444 fat cell differentiation
GO:0045471 response to ethanol
GO:0070625 zymogen granule exocytosis
Cellular Component
GO:0005737 cytoplasm
GO:0005770 late endosome
GO:0005794 Golgi apparatus
GO:0005796 Golgi lumen
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000078808
View Gene Order
ENSBTAG00000015642
Not yet available
Cross-References
SwissProt Q61112
TrEMBL
UniProt Splice Variant
Entrez Gene 20318
UniGene Mm.293517 Mm.471112
RefSeq XM_006538683 NM_011341 XM_006538684
OMIM
CCDS CCDS19054
HPRD
IMGT
MGI ID MGI:108079
MGI Symbol Sdf4
EMBL AK157860 AK163400 AK167113 AL627204 BC068152 CH466594 D50461 U45977 U45978
GenPept AAB01812 AAB01813 AAH68152 BAA09052 BAE34238 BAE37334 BAE39261 CAM13857 CAO78017 EDL15066
RNA Seq Atlas 20318

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca