Version 5.4
Mus musculus Gene: Jmjd5
Summary
InnateDB Gene IDBG-209236.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Jmjd5
Gene Name jumonji domain containing 5
Synonyms 3110005O21Rik; Jmjd5
Species Mus musculus
Ensembl Gene ENSMUSG00000030752
Encoded Proteins
IDBP-209238
jumonji domain containing 5
IDBP-541635
jumonji domain containing 5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000155666:
This gene likely encodes a histone lysine demethylase. Studies of a similar protein in mouse indicate a potential role for this protein as a tumor suppressor. Alternatively spliced transcript variants have been described.[provided by RefSeq, Feb 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 7:125444676-125462265
Strand Forward strand
Band F3
Transcripts
ENSMUST00000033010 ENSMUSP00000033010
ENSMUST00000135129 ENSMUSP00000114890
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 1 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0003682 chromatin binding
GO:0046872 metal ion binding
GO:0051864 histone demethylase activity (H3-K36 specific)
Biological Process
GO:0000086 G2/M transition of mitotic cell cycle
GO:0006351 transcription, DNA-templated
GO:0008150 biological_process
GO:0045893 positive regulation of transcription, DNA-templated
GO:0055114 oxidation-reduction process
GO:0070544 histone H3-K36 demethylation
Cellular Component
GO:0005575 cellular_component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000155666
View Gene Order
ENSBTAG00000019530
Not yet available
Cross-References
SwissProt Q9CXT6
TrEMBL D3YUV8
UniProt Splice Variant
Entrez Gene 77035
UniGene Mm.307239 Mm.367317 Mm.409367
RefSeq NM_029842
OMIM
CCDS CCDS21821
HPRD
IMGT
MGI ID MGI:1924285
MGI Symbol Kdm8
EMBL AC125187 AK014006 BC024807
GenPept AAH24807 BAB29111
RNA Seq Atlas 77035

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca