Version 5.4
Mus musculus Gene: Rbm38
Summary
InnateDB Gene IDBG-213353.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbm38
Gene Name RNA binding motif protein 38
Synonyms Rnpc1; Seb4; Seb4l
Species Mus musculus
Ensembl Gene ENSMUSG00000027510
Encoded Proteins
IDBP-213355
RNA binding motif protein 38
IDBP-625431
RNA binding motif protein 38
IDBP-625432
RNA binding motif protein 38
IDBP-625434
RNA binding motif protein 38
IDBP-625437
RNA binding motif protein 38
IDBP-625438
RNA binding motif protein 38
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000132819:
Gene Information
Type Protein coding
Genomic Location Chromosome 2:173020498-173034734
Strand Forward strand
Band H3
Transcripts
ENSMUST00000029014 ENSMUSP00000029014
ENSMUST00000155512
ENSMUST00000130430
ENSMUST00000173393 ENSMUSP00000133816
ENSMUST00000173878 ENSMUSP00000133388
ENSMUST00000173720 ENSMUSP00000133757
ENSMUST00000173997 ENSMUSP00000133464
ENSMUST00000173979 ENSMUSP00000133681
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 0
Protein-DNA 1 [view]
Protein-RNA 1 [view]
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003729 mRNA binding
GO:0003730 mRNA 3'-UTR binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007050 cell cycle arrest
GO:0008285 negative regulation of cell proliferation
GO:0008380 RNA splicing
GO:0010830 regulation of myotube differentiation
GO:0030154 cell differentiation
GO:0043484 regulation of RNA splicing
GO:0070935 3'-UTR-mediated mRNA stabilization
Cellular Component
GO:0005634 nucleus
GO:0005829 cytosol
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000132819
View Gene Order
ENSBTAG00000008105
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.485782
RefSeq NM_019547 XM_006499923 XM_006499924
OMIM
CCDS CCDS17139
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca