Version 5.4
Mus musculus Gene: Rbfox3
Summary
InnateDB Gene IDBG-214655.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbfox3
Gene Name RNA binding protein, fox-1 homolog (C. elegans) 3
Synonyms Fox-3; Hrnbp3; NeuN; Neuna60
Species Mus musculus
Ensembl Gene ENSMUSG00000025576
Encoded Proteins
IDBP-214657
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-214659
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-214661
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-269099
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-401788
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-401789
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-534965
RNA binding protein, fox-1 homolog (C. elegans) 3
IDBP-536668
RNA binding protein, fox-1 homolog (C. elegans) 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000167281:
Gene Information
Type Protein coding
Genomic Location Chromosome 11:118489762-118911597
Strand Reverse strand
Band E2
Transcripts
ENSMUST00000017576 ENSMUSP00000017576
ENSMUST00000103023 ENSMUSP00000099312
ENSMUST00000069343 ENSMUSP00000069598
ENSMUST00000106278 ENSMUSP00000101885
ENSMUST00000117731 ENSMUSP00000113636
ENSMUST00000120061 ENSMUSP00000113987
ENSMUST00000154746 ENSMUSP00000118332
ENSMUST00000136551 ENSMUSP00000119255
ENSMUST00000128863
ENSMUST00000134774
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0043484 regulation of RNA splicing
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0043025 neuronal cell body
GO:0043204 perikaryon
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000167281
View Gene Order
ENSBTAG00000006280
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.341103
RefSeq NM_001024931 NM_001039167 NM_001039168 NM_001285436 NM_001285437 NM_001285438 XM_006533722 XM_006533723 XM_006533724 XM_006533725 XM_006533727
OMIM
CCDS CCDS25705 CCDS25706 CCDS70358 CCDS70360
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca