Version 5.4
Homo sapiens Gene: TBX6
Summary
InnateDB Gene IDBG-25611.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol TBX6
Gene Name T-box 6
Synonyms SCDO5
Species Homo sapiens
Ensembl Gene ENSG00000149922
Encoded Proteins
IDBP-25613
T-box 6
IDBP-240000
T-box 6
IDBP-750857
IDBP-751671
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. Knockout studies in mice indicate that this gene is important for specification of paraxial mesoderm structures. [provided by RefSeq, Aug 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 16:30085793-30091887
Strand Reverse strand
Band p11.2
Transcripts
ENST00000279386 ENSP00000279386
ENST00000395224 ENSP00000378650
ENST00000553607 ENSP00000461223
ENST00000567664 ENSP00000460425
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 9 [view]
Protein-Protein 8 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0001085 RNA polymerase II transcription factor binding
GO:0001102 RNA polymerase II activating transcription factor binding
GO:0001191 RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001707 mesoderm formation
GO:0001708 cell fate specification
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007498 mesoderm development
GO:0009653 anatomical structure morphogenesis
GO:0010977 negative regulation of neuron projection development
GO:0014043 negative regulation of neuron maturation
GO:0023019 signal transduction involved in regulation of gene expression
GO:0032525 somite rostral/caudal axis specification
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000030699
View Gene Order
ENSBTAG00000009046
Not yet available
Cross-References
SwissProt O95947
TrEMBL
UniProt Splice Variant
Entrez Gene 6911
UniGene Hs.198301
RefSeq NM_004608 XM_005255523
HUGO HGNC:11605
OMIM 602427
CCDS CCDS10670
HPRD 03888
IMGT
EMBL AC012645 AC093512 AJ007989 AJ010279 AK022330 BC026031 CH471238
GenPept AAH26031 BAB14014 CAA07812 CAB37938 EAW79927
RNA Seq Atlas 6911

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca